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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1000891 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44594 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (18.75%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F005901 | Metagenome | 386 | Y |
| F008735 | Metagenome | 328 | Y |
| F009580 | Metagenome | 315 | Y |
| F011463 | Metagenome | 290 | Y |
| F048018 | Metagenome | 148 | Y |
| F080690 | Metagenome | 114 | Y |
| F100079 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100089121 | F009580 | N/A | MICIQISERDLTQRLNFSCRQRDFFIYTDDITVVDVHDMQSEELLIXAFFSDFAQMLQLAVVAQLSLVEDFLDLRNDQNLILNDDNDKA |
| Ga0272438_100089123 | F008735 | N/A | VSLLIYDESXLDIDDLDSMKEIMIIVHIHALYQTLLSCIQSIFILFILRYVKKLLKSRSDEDNNRVRKEMNDKKRLIVQDLCDDLSYHRKRLKIQFYINXRTENDEQEXSDNIMLLNLILKLLHYAKDLNXIFNHTLSELFNSILIVDQEIVRQLYLSERVTKXDFNVXKRCRKCRSFIMSEMRLN |
| Ga0272438_100089128 | F080690 | N/A | LFSFIVFNSSIYIELNSQFLMMITQIIAQILNNQSLVVIHLSANFVTVFITFKFKKLLDISEYEKNKDQLNAXEQSLIQCMNMNDDHYFFYXVKIIYVESRLIINKKTHNLMNQYXINDLCIIFIFANXXHKLHHCCDNSFKTKNAHLYLCETLKQDMNSFINYYNLFYQKKECSLMKDFLLIDCLKRNVNYFTQVIIFF |
| Ga0272438_100089129 | F001951 | N/A | MTKFKFIDSSRNEREKDEDTVETTVTKMIIFELKELLIDAKILLTLMNEMMMKMK |
| Ga0272438_100089132 | F048018 | N/A | VSXMIXRRNLSELSMYFLSXKYRXFSCSSHSIRKILLXYHASLQSTSIIXAANLSLISICFHNVXVRISIKSSSRFRISXSSXDLTSSTLNSSIFRFMKVKICESAEIIKNKYNXTESKVMIYDXSFMTLMLKMSRAKFLTILRFKTXIFRIVXCXYXCQELNVFFFLKRSFEXCVKAFDLSSILSRC |
| Ga0272438_100089138 | F005901 | N/A | MMFRLEDDAAKHIFARRCFDSLNSFTLIYELFDHLKEIYNELNKNXKSRREYNALTQADKSFNVFYFDFMKLFSYLNYDDCILMNNLQEKINNHLQNALSICSENFTSLFHLKKFLQDVNNKQRVNYQLRSERRTVIVKVTVISDKHTTSLSMMTLIINYVRSTIFSISESARSFIICYICKISSHLFKNCSQNKIDISTSQAFTSRLHEIVILKNKENEKMSSFKNSETKN |
| Ga0272438_100089140 | F011463 | N/A | MKQIIEAQVNKHKRDVIYEVNDXVXLFSRNIKTIRSCKNLKDKQLKLYQITVKVEIFYHLRLSISMKQLHLMFSSKLLRSYFDNLLSEQHSESSRFLTIENDEHXEIDDILNSRXYXDQIQYKIKXTRLDXNDEXYYVDKEEFKSLKEVLVEFHKLYSDKSH |
| Ga0272438_100089148 | F100079 | N/A | MFKHKHSIHKXYADEKTSLKEKRHKRINKEXLNYAVXLKV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |