Basic Information | |
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Taxon OID | 3300031448 Open in IMG/M |
Scaffold ID | Ga0272438_1000912 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 44108 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (23.08%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001951 | Metagenome | 612 | Y |
F004755 | Metagenome | 424 | Y |
F021896 | Metagenome | 216 | Y |
F048018 | Metagenome | 148 | Y |
F089602 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272438_100091216 | F048018 | GAG | MIXRRSLSELSTYFLSXKYKXFSCSLHSIREILLXCHASLXSTSIIXAANLLLISTYFHNVXVKVSAESLSRFRVSXSSXDSMFSTSNSSISKFMKVKICKDAEITKNKCNXAEFKMMIYDXNFITLMLKMSKMRFSTILRFKTXVFRIVXCXY |
Ga0272438_100091218 | F021896 | N/A | MMKNNLKSEDFLKNVECNLRFLKSDKEYIFSNETSERSSYSTIIIDESFIKVRKI |
Ga0272438_100091225 | F001951 | N/A | MTIMKLRFVDSLKDEKERNKDTVETTITKIMILKLKELLIDAKMFLTLMNKTMTKMKQD |
Ga0272438_100091226 | F089602 | N/A | MKNEXLSFIKILSEEDNNLSEIIDIVLQIVNQQEIFHQRTFFLLIKKIVVVNKAIHVLLQSFMKI |
Ga0272438_100091250 | F004755 | N/A | LKELAELFNDSDKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINFRLQFIXIDQLVQSDFLKEIHIYLIHLNNDQRVIXKIKNKVNLIKRVDNLSKIIFHKAVVTQLVNHSKSDHLKSRDAVLTSVKEADVLVETCFICHKSDHSSRECSDQSIRINAVNNEYNRFEFDFNSNFDSKN |
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