NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000912

Scaffold Ga0272438_1000912


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000912 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44108
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (23.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F004755Metagenome424Y
F021896Metagenome216Y
F048018Metagenome148Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100091216F048018GAGMIXRRSLSELSTYFLSXKYKXFSCSLHSIREILLXCHASLXSTSIIXAANLLLISTYFHNVXVKVSAESLSRFRVSXSSXDSMFSTSNSSISKFMKVKICKDAEITKNKCNXAEFKMMIYDXNFITLMLKMSKMRFSTILRFKTXVFRIVXCXY
Ga0272438_100091218F021896N/AMMKNNLKSEDFLKNVECNLRFLKSDKEYIFSNETSERSSYSTIIIDESFIKVRKI
Ga0272438_100091225F001951N/AMTIMKLRFVDSLKDEKERNKDTVETTITKIMILKLKELLIDAKMFLTLMNKTMTKMKQD
Ga0272438_100091226F089602N/AMKNEXLSFIKILSEEDNNLSEIIDIVLQIVNQQEIFHQRTFFLLIKKIVVVNKAIHVLLQSFMKI
Ga0272438_100091250F004755N/ALKELAELFNDSDKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINFRLQFIXIDQLVQSDFLKEIHIYLIHLNNDQRVIXKIKNKVNLIKRVDNLSKIIFHKAVVTQLVNHSKSDHLKSRDAVLTSVKEADVLVETCFICHKSDHSSRECSDQSIRINAVNNEYNRFEFDFNSNFDSKN

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