NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000943

Scaffold Ga0272438_1000943


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000943 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43459
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021026Metagenome220Y
F023763Metagenome208Y
F038009Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100094332F023763N/AVIVEFKQKFTSMSLMMIQLLNXHEILKIFVICDHFNRISKVFELXSSFLESANNDHEFFIIDLIVTLNXVMLLQKVSDXMKNLILIILRKNVIEHIVXSIDFYHNLVIXIIMIKNNLESEDFLKSVKCNLAFLKSDKEYIFFDEMSEXDSYSTIVINESSIKVREI
Ga0272438_100094334F038009N/AMIKALNFQLNYVKLYKRSIELICLRNNRSFKKEKILILDFXXVFFLNDLKNITKSFLFQMRDKIEXDLFLVNELNISLLFMSEXRIMLLLVSRRETELLLASELRTELLLVSELKTELLLASEXETKLLLTSKLNAELLLVSNL
Ga0272438_100094335F021026N/ALHQLTHSCRLQEFNDQVDLINDITYVIKITMILNEHIKKLFFYIIELSQYFIIMSLSXLHHHVIDVNFEHNILILFFFFCLNYCYQFLIKIYDFNQQKENFSLEVNKVAFLQSRSQFAHNKQLSSXIIHKK
Ga0272438_100094338F001951N/AMIIMKLKFIDSSRNEREKNKDTVKITVTKVMIFELKKLLVNAKMFLTLINKTMMKIK
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