NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1000988

Scaffold Ga0272438_1000988


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1000988 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42236
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (18.60%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F020121Metagenome225Y
F023763Metagenome208Y
F083460Metagenome112Y
F094625Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100098814F083460N/AMKSSDSQAYSDALLELNASSIKYVTRHXLHKLLNHRFNHEESQDNSENDDENEAAEAV
Ga0272438_100098816F094625N/AMIKNSVEIFCIMQKLQNQVQQHDVIISSLFIILSSSVYIELNSQSLAMITQIVTQILNNQSSFIIYFFVNFVAVIIAFRFKKLLDISEYEKNKDQLNAXEQSLIQRMNVNDNHYFSHXVKIIYVESRLIINKKTYNLMN
Ga0272438_100098820F001951N/AMIKILFXIMIITKFKFIDSLKDEKERNKNTVKTTVTEMMIFKLKKLLVNAKMLLTLTNKTMMKMKXD
Ga0272438_100098826F023763N/AMICDHFNRINKVFKLXLSFLKNANNDYKFCIINLVVTLNXVMLLXKVSDXMKNFILIILKKNVFEHIVXSIDFYHNLMIXFIMMKNNLKNENFLKNVECNLTFLKSDKEYIFSDEMNERNSYFTIVINESFIKVREI
Ga0272438_100098827F083460N/AMXLQIKSLNSQAYSDALLELNASSIKYAMKRXFHELLSYHLNHEESQSNSENNDENEAAEAV
Ga0272438_10009883F020121N/AMKKLTEHLRDEMLITQIIYKFNVNLSHHSCFKYFIEDEVXLNVHNLSIAHFAVELNDHNVDLFKIKHIFKNNFLIIELNLSAFMKIHSIFYVILLNHITSDFLLNQHQKSXKLIVIENDKKFXYVNSILNFKHDKCYNSSLLKYYVNXENYFSTXKSFHLLNNYEQALNEYHLVNSVVEESHVLSYVIFQYQC
Ga0272438_10009886F023763N/AMICDHLNKVDKIFKLXLSFLKSANNDHKFFIIDLIVILNXIMLLXKVSDXIKNLIFIILKENVFEHIVQSIDFYHNLIIXIIVMKNNLESKDFLKNVECNLTFLKSDKEYIFSDETSKRDSYSTIIINESFIKVCKI
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