Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1001083 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1001083 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39842
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (9.30%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

39842

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (9.30%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Onygenales → Ajellomycetaceae → Emmonsia → Emmonsia crescens	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Onygenales → Ajellomycetaceae → Emmonsia → Emmonsia crescens

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F028367	Metagenome	191	Y
F038009	Metagenome	166	Y
F070710	Metagenome	122	Y
F087979	Metagenome	109	Y
F089602	Metagenome	108	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100108312	F094622	N/A	MFTLKQRVYLNDSNSKDNVTAIIMKMNXELNKRLKRSTLVITHHDELKELVTKMKHFTNIVTVNQEYHEKIYKIYSDNQTFLKTVKVMISTKDQTHLQXV
Ga0272438_100108323	F028367	GAG	LCKLDEILSKENYFEKSFLIDAYFISQNXSFSLRSLIDSDSVIYMIIHSNLVNKVCEKLKIQPISLTKKKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLITDIDHHEVILSKLXMNKNEILLNMQNDVIVFSNQLNTSISIFSIFLNSKHSSXSQSTSFSSIT
Ga0272438_100108331	F070710	N/A	MIKQSFLQILQYNIRKSLKIQKLFLINREVHDFDIIIIQKQSCNINDMQSFNSAYNFFYLVKNTSSQLRTCIYVNKYLRLDQXVIETAESNICLIRILTRNTDDETQTLQLINIYNLYSLFFTFTKRSLIISRLSKLLKNDCK
Ga0272438_100108336	F038009	N/A	MSNIIKASNFQLNYIKLYKRSIELICLRNNRSFKEKRILTLDFXXISFLNDLKNTIKSFLFQMRNKIKQSLFLVNELNISLLLMSKXEVILLLVSKXETELLLASKLRTELLLVSKLKTELLLSSEXETKLLLASKLSAELLLVNNL
Ga0272438_100108338	F001951	N/A	MIIMKLKFINSSRNKKERDEDTVETTVTKMMIFELKELLVNAKIFLILMNKMMIKTK
Ga0272438_100108339	F089602	N/A	MKDEXLSFIEISSEENNDLSEIIDITLQTVNQXKIFHQRTFFLLIKKIVIVDKVIHVLLQSFTKI
Ga0272438_100108341	F087979	N/A	MKEKNESSTFIYMNQAKSRLDSSFIDLRLQKFMHIIKIIKTKLLKLN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1001083

Overview

Ecosystem & Geography

Associated Families

Sequences