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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1001161 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38605 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (32.35%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009377 | Metagenome | 318 | Y |
| F024448 | Metagenome | 205 | Y |
| F028667 | Metagenome | 190 | Y |
| F064252 | Metagenome | 128 | Y |
| F104136 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100116110 | F104136 | GAG | MIFSIRLAQTFSESXSTNKLXIXMNSSTSACKSTFDXRNXMLDQPSRHQRFKSLALSLASXRRSLLRSQLQSLHERNSEYRTLTLLKRSCLKKNSASNARSQNIKHVTVSSQLRCTKLQRIXKTICSRQSSDXERHAHILLHQYARXLVXFQIVYCEHHLE |
| Ga0272438_100116114 | F028667 | N/A | MIRNNLLRSFRKFTRNSLNYFYQNTHSNLLKFIKSITQSYHNQIYLSIFIFLTMTRDFELVKSXTARLLKSTVSKXVSLISFDTSARSQNVAISXNINMSQQLRQXAIDQSDEIIKMLIELRDQRDMILKLNKQXINLQVDHIKRLDELEINQTTIDTQEEIIVELREKVLSLKKKQRSVNHSRSRQSMKSQASIENHTRRKSFTLFDNDHHKFFKFSNSSIFTDEDESTXDSXRIKIDDKLQTNVNHFNNENICIVYVISRLEDDAAEHIFAXRQHDALHSYISIDKLFEHLKEIYNELNKNQKCCREYNALRQADKSFNVFYFDFMKLFSYLEYDDRTLMNDLQNKINNRLQNALSICSKNFTSLTRLIIFLQDVNSKQRVNYQLRSERCTVIIKVTVVSDKCATSLSVTTLIVDYVKSTISSISESARSSIICYICKTFNHLFKNCSQLNKIDTSASHAFISCLHEIVISKNKENEKMSFENSEAKN |
| Ga0272438_100116127 | F024448 | N/A | MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVITQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLTVQDHTIDTASMLITXLNQHQMILEKTXMNKINLVIDMQIDSLRFSNFNSTSQKLIALLSSNKSITKRKSLTSTHILKRFFTFVTSQFSQNKKFIE |
| Ga0272438_100116128 | F064252 | N/A | MNHIQSRQSMKSXASIENHTRRKSFTLFNNDHHKSLKFSNLFIFTDEDELTXDSXRIKINDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAXYQHDSYISINELFEHLKEIYNELNKNRKCRREYNALRQADKSFNVFYFNFMKLFNYLKYDNCTLMNDLQNKINNRLQNALSICSKNFTSLIHLRIFLQDVNSKQXVNYQLCSERCTVIIKVTVVPDKCVTSLSITTLIIDYVKSTISFISESMRSSIICYICKILDHLFKNCSQLNKIDTSASYAFISRLHEIIISKNKENEKMFFENNEAKN |
| Ga0272438_10011619 | F009377 | N/A | MTRSTELESESESVSIARYKLQNARRESLLSQNRTASEEEDMNASSNTEEENTNALLFDHEMIKISISTKLNAXISAHEADNLVVFIKYMCQQHDIEIKIHNDMIQMLNDVNKINIELKATQTTLNAVXTHLQKEMKKKNVIIRHLEATSSRLSTSISKDXFLKSIKLSDSFLFEDSRQNVNNXLFXMXNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIALRMRDTITNSFLEAEEILSIINKMYDNLNQHHTTQRQFLKLY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |