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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1001167 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38478 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (6.98%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F021026 | Metagenome | 220 | Y |
| F040408 | Metagenome | 161 | Y |
| F041516 | Metagenome | 159 | Y |
| F050043 | Metagenome | 145 | Y |
| F064254 | Metagenome | 128 | Y |
| F075494 | Metagenome | 118 | Y |
| F087979 | Metagenome | 109 | Y |
| F094624 | Metagenome | 105 | Y |
| F102180 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100116710 | F075494 | N/A | MFVHSININGYSAEHVESRLQDETHXXTQVINDVEKMFIHSVSEXRYSAKHVKSRSQDEIYCIXVINKVKKMFIHNVSENMNTCSAVHVRSMLLRVMTLAMQETHLDEVHFLKDRISQFKSTTSRSTNVEILTYKYHNVTKKQFNSVAETVNCKQLISHAIVKVLTIHKTTYNFSSKFVVELIKILQQEDEFAVRLKADEMMSIXKNDVEA |
| Ga0272438_100116720 | F087979 | N/A | MKEKNESSTFIYMNXAESRLNSSFIDLRLQKFTHMTEMIETELLKLD |
| Ga0272438_100116722 | F001951 | N/A | MTKLRFIDSSRNEKERDEDIVKITVTEMTIFEFKELLVNAEMFLTLMNEMMMKTKQD |
| Ga0272438_100116724 | F021026 | N/A | MIVFCILRQAQSKVLALTLIDSEVFAYVFMNKFFAQQHHLFLHQLTHSCRLXEFDDQVALINDITHVIKITMILDEHIKRLFFYVIELSQYFIIMNLSXLHHHVIDVNFEHNIFILSFFFCLNYCYSFLVKIYDLNQQEENFLFKVNKVAFSQSRSQFAHKK |
| Ga0272438_100116728 | F094624 | N/A | MKHYLRVFVNYMQNDXAKXLSEIEFIVNNASSSITLASLFLINLSQNSRLDFKSSESLLKNFTSQAXNKLINVKKFIKKMKKLTEHLCDEMLIIQIIYEFNVNLFHRSCSRYFVENEVXLNACNLSIARFAVKLDDHNVDFFKIKRVFKNNFLIIELNLSTFMKIHSIFHVTLLNHIASDSLLS |
| Ga0272438_100116736 | F041516 | N/A | MIQKVIHIHEAYNSSLRNHKIIHEKENLSNIEKMLHMSKEGILIKDFNLHHFI |
| Ga0272438_10011674 | F050043 | N/A | MKRKXRLKETERMINKTMIIIHSCLCFIISITQFNQKTSNFYASFTHDXCCHLCQLHITYTIYNVIYTHYNXRXIIIQLKVSFFLVFSQRFEDFYRELLNXNHEYTSLFIKINQDIDYXNQEXTHLKKKIIIMMNXQLKIKSKTKVRDXIENQIXVSSETLXLCQDII |
| Ga0272438_100116741 | F102180 | N/A | LTLVITHHNELKKLVVEAKHLADVVTANQEYHEKIYKIYSDSQISLKAVKVMTSTKDQTRLQ |
| Ga0272438_100116742 | F064254 | N/A | MQELYELISFLLFLSFIXLFNDVTVXNXFSMLVKNIIXMITVIMLMISRSFLKFMMFSLHCIIFHSIFHLKHVNRTCLINIQSLSHLHIAIATSNTRFSCRNXLKSIFLMHNCINNALXDFAXFLCRCKCXXIIFDVKYXKXAVLNFSLQTILHVYLIYFCMSVSCIIISMCXCLINDRDNLCTSLIILSAALFSSTSAYFIIQCNFSVTF |
| Ga0272438_10011678 | F040408 | N/A | MYDYESIFDICIKNNVMKEEVSAAKKHVKMLQDVQNILMQXX |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |