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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1001254 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36920 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (17.39%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F003820 | Metagenome | 466 | Y |
| F009580 | Metagenome | 315 | Y |
| F021026 | Metagenome | 220 | Y |
| F038009 | Metagenome | 166 | Y |
| F080690 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100125414 | F000597 | N/A | MKDVLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYLFIDEVITQIICDQLQIESLTLIKAKSIQEFDDHYAKKLITHVIYLNLTVQDHMINIASMLITQLD |
| Ga0272438_100125415 | F003820 | N/A | MKLFSYLNYDDCTLMNDLQNKINNRLQNALSVCSENFTSLSRLKKFLQDVNNKQQVNYQLRSERCTVIIKVTVVSDKRVTFLSMMTSIINYVKLTIFSTSESARSSIICYICKISSHLFKNCSQNKINILTSXAFIFHLHEIIILKNKENEKMSSFKNSEAKN |
| Ga0272438_10012545 | F038009 | N/A | MSNVIKALNSQLDYVKLYKRLIELICLKNNRSSRKKRILTLDFXXVFLLNNLKNTTRDFLFQMKNKIKQDLFLMNELSISLLLMSQRKVRLLLVNRQKNELLLASKLKTELLLVSELKTELFLSSKLRTKLLLASKLNAELLLVSDL |
| Ga0272438_10012546 | F021026 | N/A | MIVFYILRQAQSKVLTLVLIDSEVFAYVFMNKFFAQQHHFFLHQLTHFHRLXEFHDQVALINDIIHVVEITMILDEHIERLFFYVIELNQYFIIVSLSXLHHHVIDVNFEHNILILSFFFCLNYCCQFLVKIYNFNQQEENFSLEVNKVAFLLPRSQFTHKKQLSSXITHKKQFSLQIIHKKQFSLQITHKKQFSIQFTCKK |
| Ga0272438_10012547 | F009580 | GAG | MICIQISEHNLAQKLNFSRRQXDFFIYIDDITVVNIHDTQSEELLIXAFFSNFAXMLQLAVVTQLLLVADFLDFRNDQSLILNDDNDEV |
| Ga0272438_10012548 | F001951 | GAG | MTMMKFRFIDSSRNKKERNEDTVKTTVTEVMIFEFKELLVNAEMLLTLMNEMMMKTKRD |
| Ga0272438_10012549 | F080690 | N/A | MKSSHNLLIDNERAVEQFAQSVIENSVKIFRVIQELQNQVXQHDVITSFSFIIFSSSIYIELNSQSLAIIAQIIAQILNNQSSFIIHFSANSVAVFIAFRFKKLLNIFKYEKNKDXLNAXKQSLIQRMNVNDDHYLSHQVKIVYVKSXLIIDKKTHNLMNQYXVNDLCIIFIFADXQHKLHHCCDNSFKTENAHLYLREILKQDMNSFADYYNLFYQKKEHSLMKDFSLIDCLKRNVNYF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |