NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001279

Scaffold Ga0272438_1001279


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001279 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36554
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (15.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F033266Metagenome177Y
F040408Metagenome161Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10012791F033266N/AMSSRSLTEERFEEFRNRFSQISDADSSKSRTESPSAASFIHEDDESFAETVIPLVFYEIXKARSLALDEETDRLYELDKQQEDEIKELKTRLQAKENTSSDFTYSERS
Ga0272438_100127912F021452N/AMIENDMLISCFISMLNDSFNFKSFIVDIILNNLEKIFRFLALINIEVIDMTFINDLLISELCDCFDIQLISLFKSKSIYSYDKIFDQRFITHALYILVTIQEHKNEMMFLLITHLNQHKIIIDNF
Ga0272438_100127919F021452N/AMSDDSFDFKSFTVDIILSSLEKIFRSLALINIEVINMIFIDESLISELCECFDIQLISLLKSKLIQLYDEISDQKSITHALYTLIMIQEQKNEMMFLLITHLEQHKIIIENLXLKRNQILMNFANN
Ga0272438_100127921F086376N/AMTRSSESASIAHYELQNARRESLLSQNXTASEEEDTNASSNIEEKNMNVLLFDHEMIKISISTELNAXISTHEADYLVVFIKYICQQHDIKIKIYNDIIQMLEDVNEINITLKIMQTRLQKENRDKNVIIHHLKTALSQQSTLISEDXFLKSIKLLNSSLFEDSLQNVNN
Ga0272438_10012799F040408N/AMYDYKSIFDIHIKNDAMKEEMSAAKERVEMLQDVQNTLM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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