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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1001285 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36426 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (13.16%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F020121 | Metagenome | 225 | Y |
| F021896 | Metagenome | 216 | Y |
| F023763 | Metagenome | 208 | Y |
| F036035 | Metagenome | 170 | Y |
| F036036 | Metagenome | 170 | Y |
| F042102 | Metagenome | 158 | Y |
| F074204 | Metagenome | 119 | Y |
| F094625 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_10012851 | F000597 | N/A | SFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIQEFNDHYAKKLITHVIYLNLTVQDHTIDTAFMLITRLNQH |
| Ga0272438_100128510 | F036036 | N/A | MLVSLIHHLFSCFDQSFMSEDQCLVHLFRYILDLINLQAFASAFILNDVRVEAHMRMKAFVHEEESQEDDXEQDVIVDKLDHE |
| Ga0272438_100128512 | F074204 | N/A | VFCILHQAQFKVLTFTLIDNEVFAYVFMNKFFAQQHHLFLHQLIHSCRLQEFDDQVALIDDITHVVEITMILNEHIKKLFFYVIELSQYLIIMSLS |
| Ga0272438_100128515 | F020121 | GAG | MLIAQIIYEFNVNLFHRSCFRYFIEDEVXLNAHNLSIAHFAVKLDDCNVDFFKIKHIFKNNSLIIELNLSAFMKIHSIFYVILLNHIASDSLLNQHQKSXKLIIVKNNKRFXYVNSILNFKRDKHYNSSLLKYYIDXENYFSTXKLFHLLNNCEQMLNEYHLVNSVIEESYVLSCVMFQC |
| Ga0272438_100128519 | F023763 | GAG | MSFQNCLMLILMLRIECILLFKKIFXATCQSIQLIIDLVEMISNVIVESRQKFASTSLMMIQLLNXYEILKIFVIHDHFDRINRVFKLXSSFLESVNNDHEFFIINLVVTLNXIMLFXEVSVXMKNFILIILKENVFEHIVQSIDFYHNLVI |
| Ga0272438_100128520 | F021896 | N/A | MIKNNLESEDFLKNVKCNLTFLKSDKEYIFSDETSERDSYFTIVINESFIKVREI |
| Ga0272438_100128523 | F036035 | N/A | MKDDAMQREHHELEKASRNHECDNNDHLNDTLDRHTESISDCDVIKESDERERK |
| Ga0272438_100128532 | F094625 | N/A | LFTLQTVDALSATFSYIEISSSYSFTQMKSFQNLLIDDERAVEQFTQSMIENSVEIFRIMQELQNQVXQHNVITSSLFIILNSSIYIKLNSQSLAMIVQIFAQILNNQSFFIIHLSANFVAVFIASRFKKLLDIFEYERNKDQLNAXEQSLIQRMNMNDDHYLSHXVKIIYVES |
| Ga0272438_10012855 | F042102 | N/A | MARSSESVSIARYELRNARRESLLSQNRTASEEKNMNALLFDHEMIKISINTELNAXINAYEAGDIVVFIKYICQQHDIEIKTYNDMIQMLEDVNKINIMLKIMQTRLQKEMRNKNVIIHHLENASSXQSTSISEDYFLKSIKLLNSSLFEDSTQNVDNXLSQMQNKLKTNKNHFSIKELKIAYIKSXVSEAAIKHIASCMQNTFLNSFLEVEEVLSIINKMYDDFNHHHTTQRQYLKLYQNKIFFHEFXMKFQRFSAELKYNNKTLLNDFQHKISSDLQRATLNEXIMNLNEFVDICMQVDVRLTELNAQSVVKASATQAARSVSSTSIARLTSSVSSXKRLRRSNLDSIQKELFKKELCFKCKKSEHRAYNCFKMTQVHEIVANSKNDLSSSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |