Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1001296 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1001296 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36227
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (22.86%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

36227

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (22.86%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F021026	Metagenome	220	Y
F038009	Metagenome	166	Y
F061399	Metagenome	131	Y
F087979	Metagenome	109	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10012961	F001951	GAG	MIMMKLKFIDSSRNKKERDEDTVKTTVTKMIIFELKELLIDIKTLLTLMNETMMKMKQD
Ga0272438_100129614	F021026	N/A	MQQHHLFLHQLIHSCRLQEFNDQVTLINNITYIVEITMILNEHIERLFFYVIELSQYFIIMNLSXLHHHIIDVNFEHNIFILSFFFCLNHYYSFLIKIYDFNQQEENFLFKVNKVTFSQSRSQFAHKKQFSSQIIYKK
Ga0272438_100129617	F001951	N/A	MTIIKLRFIDSSRNERERDKNIVKTTITKMMIFKLKELLIDAKMLLTLTNETMTKTKQD
Ga0272438_10012962	F009580	N/A	MICIQISERDLAQKLDFFCKQQDFFIYIDDITVIDVHNMQSEKLLIXAFFSNFAXILQFAVVAQLSLIADFLDFQNDQSLILNNDNDEA
Ga0272438_100129623	F000597	N/A	MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIEFLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDHMIDTAFMLITQLD
Ga0272438_100129627	F087979	N/A	MKEKNENSTFIYMNXTESRLNNSFIDLKLQKFAHMIKMIETKLLKLN
Ga0272438_100129628	F008735	N/A	VNLLIYDESXLDIDDLDSMEKIMIIIHVHALYQTLLSCIQSIFVFLIFKYVEKLLESRSDEDNDRVHKEVNNKKRLIIQNLCNDLSYHHKRLRIQLYINXRTKNNEXEXDDDIMLSNLILKLLHYMKDFNXIFNHTLSELFDNMLIIDQEIVRXLYLSERITRXDFNV
Ga0272438_10012963	F021026	N/A	MNKFFTQQHHFFLHQLTHSRRLQEFDDQVALINDIIYVVEITMILDEHIEKLFFYVIELSQYLIIISLSXFHHHVIDVNFEHNILILSFFFCFNHCYSFLIKICDFNQQEENFSFEVNKVTFFQSRSQFTHKKQFSSRIIHKK
Ga0272438_100129630	F021026	N/A	MIVFCILHQAQSRVFILILIDSEIFAYVFMNKFFTQQHHLLLYQLTHSCRLQEFDDQVTLINDIIHVVKITMILNEHIEKLFFYVIELSQYFIIMSLSXLHHHVIDVNFEHNILILSFFFCFNHCYSFLIKIYDLNQQEENFSFKVNKVTFFQSRSQFTHKKQFSSRIIHKK
Ga0272438_100129631	F038009	N/A	LIELICLKNNRSSKEERISTLDFXXVFFLNELKNMIRSFLFQMKNKIERDLFLVNELNISXLLVSEXKIILLLVNRXKTELLLTSKLKIELLLVSELKIELLLSNEXETKLLFASKLKTELLLSSEXKTRLLLTSKLNTELLLMNNL
Ga0272438_10012967	F061399	N/A	LYFLSVLKHHXCDIFMNYVNSLSLSIFMNITYKYILIFIDYFIKMKHLVLIIFTKVEEAINCFYAHVXKHHNLLKFFMSDRDTQFIFNVXKHMCKMLKINAKLLIMYHSEINDQIEKVNVVIKYYLXIFVNYMQNDXVKXLSEVEFIINNASSLITLASLFLINLSQNSCLNFKFSESLFKNFMFQAXDKLINVEEFIKKMKKLTEHLRDEMFIAQIIYEFNVNLFHHSCFKYFVEDEVXLNVCNLSIVHLAVKLNDHNVDFFKIKHVFKNNSLIIELNFSAFMKIHSIFHVILLNYITSDFLLNQHQKSQKLIIIKNDKRFXYVNSILNFKYDKCYNLLLLKYYIDXENHFSTXESFHLLNNYEQALDEYHLINSVIEESHILLCVIFQC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1001296

Overview

Ecosystem & Geography

Associated Families

Sequences