NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001324

Scaffold Ga0272438_1001324


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001324 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35867
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (17.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F033265Metagenome177Y
F036504Metagenome169Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10013241F033265N/AMFSVVEKMMTSQSKKRFKSCYETFIDCMIYSVLLFXTKTFNSYXLCEKVFASDXESQLVYSQFIILRLMINXSESIKTLNANLEFTAITCRTIESNEYLXXSSVTISISSQSLQXLSFTSIKNFILEXVLIQIQLTTK
Ga0272438_100132431F100079N/AMFRYRHFICKXYADKKTLLKEEKHKQINKEXLKYIV
Ga0272438_100132435F036504N/AMNHYSTEKIHIVYVIFRLKDDADQQIYAKHHVDAFSFYQSLSKLLKHLKEIYEDQNLIXKCHHEYVALKQLNKLFSSFYSEFTRIFSFLNYDNVILMNDIQNKINNHLQNALSVYLIEFSSLNKLKIFLQDVNNKQQVNYQLRDEQXTVKSIAASKKRFVSLLISASVLITSYVQLATFFTLESEXSRMSIICFNCKVLNHLSKNCSQLKTSTSTSHAFISCLNEIIMSKEEKKLFTEKLKNEAKN
Ga0272438_100132436F000597N/AMMKDVLISSTMSSSNNFFALKSLTTKCVLSSNEISYSLKSLIDIEAADYSFIDEIIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLIIQDHMIETTFILIIXLD
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