NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001338

Scaffold Ga0272438_1001338


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001338 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35663
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036994Metagenome168Y
F061400Metagenome131Y
F087979Metagenome109Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100133810F061400N/AMLLKYYNCIMNLNSKKTIIKAXNIYRKKEDKDNAIDEAADSFEADLQNVLCSIIV
Ga0272438_100133827F091080N/AMTDFDVXIFNDDINRLFAEFIKIXFLFNQRFSMIILCXSKQVINKNIISFLCSXIMINVYRVYVINFQSKILSYDQINFDFDSDINXISKRSHSFNIKDSSMKVMSMTLVFIRTRNMNIFSKLFKMTSTVNDLKLNESSDMLMKQNMNILLSVTTLMKTDRFLNLQQSHALELSXNSHMLYVLTFCIXSRVFS
Ga0272438_100133832F036994GAGMIIEADSLVDLLIEEIDYRLVIEAGSLVAREREVDRFTDR
Ga0272438_10013385F087979N/AMYKIKNKKRKEKNESLTFIYMNXAELRLNSSFIDLRLQKFMHIIKMIEIKLLRLN
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