NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001368

Scaffold Ga0272438_1001368


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001368 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35293
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (24.39%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F051591Metagenome143Y
F074202Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100136827F074202N/AMKLXNFKMYVYEXSLFTCQKEIYMYVKKYLQLFYCXLRSQSLSLTKLLEICISNFRKTVNCKMNCKMNCKTIYMSFLLMSSCLLCSDNAFNLALLLNDDFFLKLVISKLRLRVTAELNFKEEVILRCSFFNAKDDDLDSSFDLETVTNFIKFLXFIMFHNDXLFFFNLFLSVKCDVTQSKXADAENQAFKSEVVVDLAVVDLTVLNNVNNESSSKFENLDCKDDIKRSTSIVSSFFSSDIVN
Ga0272438_10013683F051591N/AMLDAIALYFMYXSSCIISLRIVMTDLDLLSCTSRKDKTDSDLIRNAVLLCNNVVLCAIFKCKRVRFRFLHQYAVFCAVLKSIDDLFFSCEFALXFINQITVXIDDSFFCVDELSFRRRFXSAXARKISIFDFXLATQSSVKLLSRMRACFDRTIVLYNLVIDLIYHMLR
Ga0272438_100136840F000597N/AMKDVLISSTMSMLDDSFASESLTTECVLSSNEISYSLKSLIDIKAADYSFIDEVTAQIICNQLQIKSLTLIKAKSIREFNDHYAKKLITHVIYSNLTV
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