NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272438_1001421

Scaffold Ga0272438_1001421


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001421 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34667
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (31.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F010214Metagenome306Y
F075493Metagenome118Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100142117F005901AGAAGMNDKLIVNVDQFNDEIICIVYMMSRLEDDAAKYIFAXHHFDSLNSFTSIYELFNHLKEIYDELNKNQKSQREYNALRQADKSFNVFYFNFIKLFSYLNYDDCTLMNNLQNKINNRLQNALSICSKNFTSLFHLKKFLQDVNNKQRVNYQLRSERCIVIIKVTVISDKHATFLSMMTLIINYVKSTIFSIFKLARSSIICYICKTLNHLFKNCSKLNKINISASXAFILCLHEIIILKNKENEKMSSFKNSETKK
Ga0272438_100142118F000597GAGVTFIKDAMKNVLISSTTSMSDDSFASESLTIKYILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKTKSIQEFDDHYAKKLITHVIYSNLTV
Ga0272438_100142125F075493N/AMXSVQAMHKYMLRHLMTSLAVTSQAIHVXNVSKVQINVQIYAFNSDVHCKNAFCFLKIITHLYHLIAQMQSLCXNYVNVCDAFSVLFSSLISLIFVILHYCDAIACXNHCEEESVLFAFQLYLCIFLN
Ga0272438_100142131F010214GAGMKVSVLFDYDTLVLLCSSLMIFYTTMFXFNSRFKDERCFLYIHDIHDYNIHKAVFSYSIIVIYXAEKYVMKERCTXXEDRMXLYXVTLFFSXFDLCHVNIEXIVSIDMQSQSFNVXLXSMKENAFXSFSXALDFSCE
Ga0272438_10014219F100079N/AMFKYRHSICKXYADEKTSLKEERHKXVNKEXSNYAIXLKV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.