NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001449

Scaffold Ga0272438_1001449


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001449 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34365
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (9.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036035Metagenome170Y
F052973Metagenome141Y
F061400Metagenome131Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10014491F052973GAGMFRGCARLERDVFVTREECDVDEQDVGERKECWERKRVLSHI
Ga0272438_100144913F061400N/ALNSEKTIIEAXNIYHKKEDEDNAIDEAADSFRADLQNVLCFIIV
Ga0272438_100144918F094622N/AMFALKQRVYLNDSNSRDDVVAIAMRMNXELNKRLRRLILIITHHDELKELVARTKHFTDVATVNQECHKKIYKVYSDSQTSLKTVKAMISTKDQTRLQQVQIAHESI
Ga0272438_100144919F036035N/AMKDDVMQREHHELEKASRNHEHNDNNYSNDILNKHTESISDCDVIKQSDERERK
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