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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1001457 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34223 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (15.79%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009580 | Metagenome | 315 | Y |
| F020121 | Metagenome | 225 | Y |
| F021896 | Metagenome | 216 | Y |
| F023763 | Metagenome | 208 | Y |
| F074204 | Metagenome | 119 | Y |
| F096306 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100145720 | F096306 | N/A | MFAMYDNCAVNSLIVDDDFNEERSCKDNSELHALMILFNITILIATNVKIVFVESNDK |
| Ga0272438_100145723 | F009580 | N/A | VRRLRLVDKMICIQISERNLAQKLNFFCRQRDFFIYTDDVTVIDVHDMQSEELLIXAFFSDFAXMLQLAVVAQLSLVADFLDFKNDQNLILNDDNDET |
| Ga0272438_100145724 | F074204 | N/A | MIVFCILHQAQSKVFTLVLIDSEIFTYVFMNKFFAQQHHLFLHQLTHSHRLQEFDDQITLINDITYVIKITIILDKYIKKLFFYVIELNQYFIIMNLS |
| Ga0272438_100145726 | F021896 | N/A | MKNNLKSEDFLKNVECNLTFLRSDKEYIFSDEMNEXDSYSTIVINESFIKVCEI |
| Ga0272438_100145727 | F023763 | N/A | MLILMLRIEYILLFKKIFXATCQSIQLIIDLVEMISNVIVESKQKLTSMNLMIIQLLSXHEILKIFVIHDHLNKIDKVFKLXSSFLESVNNDHEFFIVNLIVTLSXIMLLQKVSDXMKNLVLIILKKNVFEHIVQSINFYHNFVI |
| Ga0272438_10014576 | F020121 | GAG | MLIAQIIYEFNVNLFHRSYFKYFVEDEVXLNVCNLSIVYLAVKLNDHNVDFFKIKCIFKNNFLIIELNLSTFMKIHSIFHVILLSHIISDSLSSQHQKSQELVIIKNNERFXYVNSILNFKRDRCYNSSLLKYYVD |
| Ga0272438_10014578 | F023763 | N/A | MSFQNCLMLILMSRIECISLFKKIFXATCQSIXLIIDLVKMISDVIVESRQKLALMSLMTIQLLSXHKILKIFVICDHLDKIDKVFKLXSSFLESANNDHEFFIIDFVVTLNXVMLLXKVSDXMKNFILIILRKNVFEHIVXSIDFYHNLVIXIIMMKNNLESEDFLKNVECNLTFLRSDKEYIFSDEMSERNNYSTIVIDESFIEVREI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |