NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001526

Scaffold Ga0272438_1001526


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001526 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33372
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (30.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065268Metagenome127Y
F079402Metagenome115Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100152614F086377N/AMIQHFXNQRQRILILDCNSVQISIVHAEVKFFFKFLDEENRNDRLRATDLNEIFAQILI
Ga0272438_100152619F065268N/AMTRSTELESESMSIAHYELQNARRESLLSQNXTASEEKNTNALLFDHEMIKISISTELNAXISAHETDNLVVFIKYMY
Ga0272438_100152621F079402N/AMXNKLKINKNRFSIEEMKIAYVKSRVSETMIKHIAFXMRNMITNSFLEAEEILSIINKMYDNFNXHHTTQQQFLKLYQNKIFFHEF
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