NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001546

Scaffold Ga0272438_1001546


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001546 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32955
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (30.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028667Metagenome190Y
F057011Metagenome136Y
F075494Metagenome118Y
F083460Metagenome112Y
F104135Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_10015461F083460N/AMRLRMKSSDSQAYSDALLELNASSIKYATRRXLHELLNHHLNHEESQDNSENDDENEAAEAV
Ga0272438_10015462F057011N/ALKENYFEKSFLINAFLIFQNESFSLQFLIDSDFIIYMLIHIRLVNKVCKKLEIQFILLVKEKLIRDYDEKLVRKTIIHKILLNLTIESHKKLTMSMLITDIKHHEAILSKLXMNKNEILLNMKHDTIIFFDQLNFSISIFSISSNMKHLSXSXLTFLSSAAHNNTSKILKHSVLIIQKESFSI
Ga0272438_100154624F075494GAGMFIYSVSEXRYLAKHVESRSQDEIYYTXVINEVEKMSVHSVNENTSTCSAMHVRSMLLRIMTLAMREMHLDEVHFSRSRISQFESTTSKSTDVETLTYKDHNVAEKQLNSVAETVDCKLLVSRVIVRVLTIHETIYNFSNKFVVELIKILQQEDEFAVKLKADETMSIQKSDVEA
Ga0272438_100154628F104135AGCAGMNASQRSNQTIRMFAAHLSILKHQLSLYSDEHKRAHLFIKLRSELHVIIINVQSISITXDALINLVAQLKTNLRKEHVLSSKXSQDEDLHDRDKVNKKTHSKRKKSHRSIRLNFSSKTSSHASSCYSKNLFNITCYMCNRKNHYSTDCRDEKIKNRSKEFDANXVFIDLMLHISCFKILKKDKLLTNASSHRGKNKKFSS
Ga0272438_10015468F028667GAGMTLKLNEQXIDLQVDHIKRLNELEINQMTINTQEEIIIKLXEKVLSLKKRQRSANQSXSRQSMKSQASIENHTXRKSFTLFNNDHHKFFKFSNLFIFTDEDESTXDSXRVKIDNKLQTNVNHFNNENICIVYVISRLEDDAAEHIFAQHQHHASHSYISIDELFEHLKEIYDELNKNRKCCRKYNALRQADKSFNVFYFNFMKLFSYLEYDDYTLMNDLQNKINNRLQNALSVCSKNFTSLTRLKIFLQDVNSKQXVNYQLRSECCTVIIKVTVVPDKCATSLSVTTSIINYVKSTIFSISESVRSSIICYICKIFDHLFKNCFQLNKINTSASHAFTCCLHEIIISKNKENEKMSFKNSEAKN
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