NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001640

Scaffold Ga0272438_1001640


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001640 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31930
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (15.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F008115Metagenome338Y
F028367Metagenome191Y
F037509Metagenome167Y
F074203Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100164023F008115N/AMLXNVYXLHDLPSSIVLNRDFQFILIMXQSLCKXLRITASLLTAYHSEINDQSKQANQDVERELRIYCNYMQNDXAKXLSMIEFSENFNIFSIISMISFYFNKKFHSXISFDSDMTDYETIHKRLEARKADDIIIRMKELFIFDHQQLKKTKQITEAQINKHRRNVIYEVNDXVXLFSRNMKTTKSCKDLKNKQLELYQIIANVEIFYCLRLSESMKXLHLMFSLKLLRLCSDDSLSEQHSESSKFLTIEDDEY
Ga0272438_100164026F028367N/ALKENYFEKSFLINASFISQSNSFSLHSLIDSDFVVYTLIHDKLVNKVCQKLEIQSILLAKEKLIXEYDEKLARKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKFXMNKNEILLNMKHDTIVFSDQLDISISVFSISSNMKHSS
Ga0272438_100164028F037509N/AMILISLLIQVHLIDNEMNIKKFMYLMIDDIERQNNIKRSIKSTRTYNHVIARESIAQSVASVQID
Ga0272438_10016403F002432N/AMKFSDNFNIFSVTLMTFFYFNKEFHSRMSFDSDMTDYETTCERLEARKANDIVIQMKKLLNLSHQQLKKMKLIIEVQINKHRRDVIYEVNDXVXLSFRNIKTTRLCKDLKDKQLNLYQITVKVSIFYHLHLSISMKHLHLIFSSKLLQSYSENLLSE
Ga0272438_10016409F074203N/AMFSHSFTEEHFKEFRNRFSQISDADSLKLSSAESFISEDDESFAETVIFFVSIKNXKTQCMILDRETDXLNELSKQRDDEIKELKTKLQTKEITSSNFIYFKRSRSQKIFDSFXFTDEKNSTXKNXYGKIQNKLEINVDLFSNEXIKLSYVHFRLFDDAADVAQFRREHDYVNLYKIINDLLKELVELFNDSDKKVNFHRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLQFIXINQLVQSDFLKEIYFYLIHLNND
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