Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1001660 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1001660 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31745
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (20.69%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

31745

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (20.69%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F005901	Metagenome	386	Y
F021026	Metagenome	220	Y
F048018	Metagenome	148	Y
F055319	Metagenome	138	Y
F061399	Metagenome	131	Y
F080690	Metagenome	114	Y
F094625	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100166017	F005901	N/A	VISRLEDDAAEHIFARRRHDASYSYILIDELFEHLKEIYDELNKNQKCRRKYNALRQADKSFNVFYFDFMKLFSYLEYDDHTLMNDLQNKINNHLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRNECHTVIVKVTVVPDKCTTTLLSAVMTLIIDYVKSIIFSTSESDRAKSFIICYICKTSRHLFKNCSQLNKIDIFASQAFTLRLHEIVISKNKENKKKSSFENSKAKN
Ga0272438_100166018	F080690	N/A	MIENSVEIFHIMQELQNQVQQHDVIILFLFIIFSFSIYIKLNSQSLVIITQIVAQILNNQSLFIIHFSVNSVAVFITFRFKKLLDIFEYKRNKNQLNAXEQSLIQCMNMNDDHYLFHRVKIIYVESXFIIDKKIHNLMNQYXINDLCIIFIFADXQHKLHHCCNNFFKTEDIHLYFHETLKQDMNNFVNYYNLFYQKKEYSLMKDFSLIDCLKRNVNYFT
Ga0272438_100166019	F094625	N/A	MIKNSVEIFHAMRELQNQVQQHDIIILFSFIILNSSIYIKLNSQFLAMITQIIAQILNNQSFLIIHLSVNFIIIFITFKFKKLFNISEYERDKDXLNAXEQSLIQRMNVNDDHYFSHXVKIVYVESXFIIDKKTHNLMNQYXVNDLCIIFIFAD
Ga0272438_100166021	F055319	N/A	MIEVRIKRLKLVDKMICIQISERDLAQKLNFSYEQXDFFIYIDDIIVVNVHDIQSEEFLIXAFFSDFA
Ga0272438_100166022	F021026	N/A	MIVFCILHQAQSRVLILALIDSKVFAYVFMNKFFAQQHHLFLHQLTHSCRLXEFDDQVTLINYIIHVIEITMILDEHIEKLFFYVIELSQYLIIMNLSXLHHHVIDVNFEHNILILSFFFCLNYCCSFLVKIYDLDQQEENFSFKVNKVTFSSSHLQFIYKK
Ga0272438_100166025	F048018	GAG	MYFLSXKYRXFLCSLHLTREILLXCYASLQSTLIIXAANLSLISTCFHNVXVKMSAESSSRFRMSXFSXDLTSLMLNSLISRFMKVKIHEDAEIIKNRCNXTEFKMMICDXNFMTLMLKMSKTRFLIISKSKTXVFRIVXCXYXYQESNVFFFLKRSSE
Ga0272438_100166026	F061399	GAG	LISQVYXXLNIYKYVQRFVXNCHVCTHFKLFKQXTQEXLCSLLILEHHXYDVFMNYVNSLSLSIFMNITYKYVLIFIDCLIKMKHLILITSMKVEEVINCFYAHVXKHHDLLEFFMSDXDTQFIFNVXKHMCKMLKINAKLSTTYHSEINDQIKKINVIMKHYLRIFVNYMQDDXAKXLSEIKFVINNALSLITLTSFFLINLNQNLCLNFKSSESLLKNLIFQAXNKLINVKKFIKKMKKLTKHLHDEMLITQIIYEFNVNLSCHSCFKYFVEDEVXLNACNLSIIHLTVKLNDHNVNLFKIKHVFKNNSLIIELNLSAFMKIHSIFHIILLSYIASDFLLNCHDARSSTRFRT
Ga0272438_100166027	F001951	N/A	MTITKLKFINSSRNEKERNEDTVKTTVTEVMIFELKELLINAKMLLTLMNKMMIKMK
Ga0272438_100166028	F094625	N/A	MKSFYNFLIDDEHAVKQFAQSMIENSVEIFHVMQKLQNQVQQHNVIISSLFIILNSLIYIKLNSQFLAMITQIIAQILNNQSSLVIYLFANFVAVFIAFRFEKFLDISEYERNKDXLNAXKQSLIQRINVNDDHYFSHQVKIIYVESRLIINKKIHNLMSQYXVNDLCIIFIFAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1001660

Overview

Ecosystem & Geography

Associated Families

Sequences