NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1001868

Scaffold Ga0272438_1001868


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1001868 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29690
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Hyaloscyphaceae → Hyaloscypha(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F010214Metagenome306Y
F020121Metagenome225Y
F023763Metagenome208Y
F075494Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100186811F020121GAGMKKLTEHLRDEMLIAQIIYEFNVNLSCRSCFKYFVEDEVXLNAHNLNIACLAVKLNDHNIDFFKIKHVFKNNSLIIELNLSAFMKIHSIFHVTFLNHITSDFLSNQHQKLQKLIIIENDKRFXYVNSILNFKHDKYYNSSLLKYYVNXEDHFFTXKFFHLLNNCKQTLNEYHLVNSVVEESHVLSCMISQC
Ga0272438_100186813F023763N/AMSFQNCLMLILMLRIKCISLFKKIFXATCQSIQLIIDLVKTISDVIVEFRQKLTSTSLMITRLLNXHKILKIFMIHDHLNKIDKVFKLXSSFLESANNDYEFFIIDLVITLDXVMLLXKVSDXMKNLILIILKENVFEHIVQSIDFYHNLVIXIIVMKNNLESEDFLKSVECNLIFLRSNKEYIFSDEMSERDSYSTIVIDESSIEVQKI
Ga0272438_100186815F001951GAGMIMMKLKFIDSLRNKRERDEDTVKTTVTKMMIFELKELLVNAEMFLTLMNETMMKMK
Ga0272438_100186823F075494N/AMFIHSVSERKYLAKHVESRSQDEIYCTXMINEVEKIFVHNVSENTSTCSAMHVRSMLLRIMILAMQETHLDEVHFLKDRISQFESTTSKSTDIKTLTYRNHNVVEKQLNSVAETVDCKQLISRAIVRVLIIHETTYNFSSKFVVKLIKILQQEDEFAVELKANETMNIQKSDVEA
Ga0272438_100186826F010214N/AVXRSSKLLMKVSVLFDYDASSLLCSLLTIFYTTMSRFNSXFKDEKCFLCICDARDCNVCRAVFSYSMIVIHXAEKYVMKERCTXXEDRVXLYXVTLFFSXFDLCHVDVKXIVSINVQSQSFNVXLXSMKENAFXSFSXALNFSRE
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