Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1002003 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1002003 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28414
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (11.11%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

28414

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (11.11%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F038484	Metagenome	165	Y
F044227	Metagenome	154	Y
F048018	Metagenome	148	Y
F070710	Metagenome	122	Y
F080690	Metagenome	114	Y
F087979	Metagenome	109	Y
F094624	Metagenome	105	Y
F104134	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_10020031	F044227	N/A	MQLQIKSSDDKACIHALLELIASVIKNATRCXLLELSNNHHHHEESQSSSEDDDENEALEAI
Ga0272438_100200311	F070710	N/A	MIKQSFLQILQYNIRKSLRIQESFLIDKEVREFDIVVIQKQDRNNNDLQSFSSAHNFFHLVKNSSSQSRTCIYINKCLKFDQXIVEIVESDICSIRILTRNTDDKMQTLRLLNVYNSCSLFTTFTERSLIISRLNELLKNDCKQLIVKDFNLHHSHXKRXKCFTRHMMIDILLNIITNARLKLLLKSDIITYEVHNQFMMNDLVFNSEKIQFMTCKCKIXIDLHQRLNYLSIITELCL
Ga0272438_100200315	F048018	GAG	MIRRYSLFELSIYFLSXKYKXFSCSLHLTRKILLXCYASLQSISIIXAVNLSLIXTYFHNVXVRMSAESLSRFRISXFNXDLTSLTLNSSIFKFIKVKICKNAEIIKNRCNXIESKVMICDXSFMTLMLKTSKARFSTILKFKT
Ga0272438_100200317	F094624	N/A	LINLSQNLCLDFKSSESLFKNFTFQAXNKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNFSCHSCFKYFVEDEVXLNACNLNIAYFVIKLNDCNVNLCKIKHVFKNNSLIIELNLSAFMKIHSIFHVILSNHIISDFLSNQHQKS
Ga0272438_100200319	F048018	GAG	MIQRRSLFKLSTYFLSXKYRXFSCSLHLIREILLXCCASLQSASIIXAANLSLISTYFHNVXVKISTESFSRFKVSXFSXDLMFSILNSLISKFIKVKICKNAEIIEDKCNXTEFKVMICNXSFMTLMSKTSKVRFLIILKFKTXVFRIV
Ga0272438_10020032	F038484	N/A	MRSILMYIARMLSAFXRSSRIFIILLLRCNLCAEIALTSATRSLYFSHCXFHXSLXYCVIAMLSLVEIIVKKKVHHLCLNCIFASSXMKTFRSTIFLMMSEXERTRLTLVKXAHINLHACLISCIXSLIQLCNVILFCNMFRXTCSKLMYVSVFKVLMFTLLNASATXCRVXFXSISSLHFLLDNSSFLSRXCQTNALNAISDLTTAEYNCLAFVKIASHVKTLRXLSVSILVTXFISICXKCASHCSFVFSCIFRIHMSDFDLITELSIYMLIIMSNLFNFLLKCMNSYFSDANVASXVQAHFAQTSCALLNILQISSVNLS
Ga0272438_100200325	F080690	N/A	MKSLHNFSINDKHAVKQFTQSVIENSVEIFHVMQELKNQVQQHDVIILFSFIIFSSLIYIKLNSQSFIMIIQIIAQILNNQSSFIIHLFANSVAVIITSRFKKLFDIFKYEKNKNQLNAXKQSLIQRMNMNDDHYFFHXVKIIYVESXFIINKKIHNLMSQYXINDLCIIFIFADXQVXQHKLHHYCDNFFKTEDAYLYLHETLKQDMNNFVDYYNLFYQKK
Ga0272438_100200326	F087979	N/A	MQEKNENSTFIYMNQAESRLNSSFIDLRLQKFMHMTEMIETELLKLN
Ga0272438_10020035	F104134	N/A	VILCRICSIDFFCISSISLLFIILIMTSHFLQSDDESSLKCCFLVAISSLVTFTHDVIFVKRRVFFCICNCLLSSXIDVFSFYTFFAMNAFXFAXCFSFKSSRRHQINFNAISFHEXSLLFSFSNIDIFINKSIMLAMFSSSSRERFDLASLFSCDESTSLAIIFKSALLQFMQFIVVQSSSRFTLSCL
Ga0272438_10020037	F010214	GAG	MRMSVLFDYDASSLLYSSLTIFYTTMFXFNSXFKDERCFLCIHDACDCNIYKAVFSYSMIIIHXAEKYVMKERCTXXKDKVXLYXVTLFFSXFNLCHVDVEXIVSINVQSQLFDVLTLINERKCILIIFLSFQFFT
Ga0272438_10020038	F094624	N/A	MKHYLXIFINYMQNDXAKXLSEVKFIINNTSSLITLTSFFLINLNQNSCLNFKFSEFLLENLMFQAXNKLINVKKFIKKMKKLTEHLHDEMFIAQIIYEFNVNLFCRSCFKYFIEDEVXLNVCNLNITHFTVKLNDHNVNLFKIKRVFKNNFLIIKLNLSAFMKIHLIFYVILLSHIISDFLSNQHQKLQKLIIIKNDERF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1002003

Overview

Ecosystem & Geography

Associated Families

Sequences