NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002068

Scaffold Ga0272438_1002068


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002068 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27884
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F024448Metagenome205Y
F070710Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100206812F005901N/AVISRLEDDAAKQIFAQRHHDASYSYILIYELFEHLKSIYDNQNKNXKCRCKYNALRQLNKSFNVFYFEFMKLFSYLDYENCTLMNDLQNKINNRLQDTLLICLKDFIILHHLKSFLQSMNNRQXVNYQLRSECCMIIIKVIIASEKRATSLSAVTTSIIKYVKSTIFSTSKSVKSFIVCYICKISDHLFKNCSQNKIDTSASCVFILHLHEIIISKNKENEKMTFFFENSEAKN
Ga0272438_100206813F024448N/AMKNVLISSTISMLNNSFASESLITECILSSNEISYSLKSLIDIEAADYSFINEVITQIVCDQLQIKSLTLIKAKSIXEFNDHYAKKLITHVIYLNLTVQNHTIEIASMLITQLDQHQMILEKIXMNKINLVIDMQINFLXFSNFNSFISKSIVLFSSHKTILKQKSLTFTHILKKSTIFVTLSFSQFKEKSVE
Ga0272438_100206818F070710N/AMINQSFLQILQYNIKKSLKIQKSFLINKEVCDFNIVVIQKQSCNINDIQSFNSTYNFFYLVKNMSSQSRTCIYVNKCLRFNQXMIETAESDICLIRILTCNTDDKTQTLQLINVYNSCSLFSTFIKKSLIISRLSELLKDNCEQLIVRDFNLHYFHXKEXRCFTQHAVINSLLDIVTNTKLKLLLKSDTITCKTHN
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Institute for Fundamental Biomedical Research
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