NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002124

Scaffold Ga0272438_1002124


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002124 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27561
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (21.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F020121Metagenome225Y
F021216Metagenome219Y
F023763Metagenome208Y
F048018Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100212419F021216N/AMKSRMKSNAMRKEHHELEKAFRNHERNDDDHLNDTLNEHTESISSCDIIEELNEREKE
Ga0272438_100212423F020121GAGMFQARNKLINVEEFIKKMKKLTEHLRDKMLIAQIIYKFNVNLSHHSCFKYFVEDEVXLNAYNLSIIHLVVKLNDHNVDLFKIKRVFKNNFLIIELNLSTFMKIHSIFHVILLNHIASDFLSSQHQKSQELIIIKNDKRFXYVNSILNFKRDKCYNSSLLKYYINXENYFST
Ga0272438_100212425F048018GAGMIXRCSLFKLSMYFLSXKYKXFSCSSHSTREILLXCHASLQSTLIIXAANLSLISIYSHNVXVRMSAKSLSRFRMFXSSXDLTSSTLNSSIFKFMKAKICKSAEIIENRCNXTESKVMICDXSFMILMLKTLKTKFLTILRSKTXVFRIVXCXY
Ga0272438_100212426F023763GAGMSFQNCLMLILMSKIKCISLFKEIFXATCQSIQLIINLIKMISDAIVEFRQKLTSTSLMTTQLFNXHEILKIFVIHDHLNRIDKIFKLXLSFLKSANNDYEFFIVDLVVTLNXIMLLXKVSDXMKNLILIILRENVFKYIV
Ga0272438_10021249F009580N/AMKRLRLVDKIICIQISERDLTQKLNFFCEQQDFFIYIDNIIVVNVHDMQSEELLIXAFFNDFARMLQFAVVAQLSLVADFLDLRNDQSLILNDDNDEA
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Biomedical Sciences Research Center "Alexander Fleming"
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