 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1002160 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27176 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (15.38%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F010214 | Metagenome | 306 | Y |
| F011463 | Metagenome | 290 | Y |
| F033265 | Metagenome | 177 | Y |
| F061400 | Metagenome | 131 | Y |
| F089602 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100216011 | F010214 | GAG | MRVSVLFDYDASSLLCSSLTIFYTTMFRFDSQFEDERRFFRTRDARDCNVRRAVFSYSMIVIHXAEKYVMKERHTRXEDRVXLYXVILFFSXLDLCHVDVEXIVSIDVXLQSFDVXLXSMKENAFXSFSXALDFSRR |
| Ga0272438_100216012 | F011463 | N/A | MKKLLSFNHQQLKKTKLIIEAQINKHRRDVIYKIDDXVXLFFRNVKIMRSCKDLKDKQLKSYQITVKAKVFYHLHLSVSMKHLHSMFSLKLLQSYSEDSLSEQHAKLLRLIIIDDDNDEHXKIDDILNFRRYQDXIQYKIKXKDLDKDDEXYYVNKDEFNNFKKVLNEFHMLYSRKSR |
| Ga0272438_100216013 | F033265 | N/A | LNYLCQKTITSFAQLYVVSSKNIIMFSVIEKTMTSQLKKRFESCYETSIDCMIYLVLLFXTETFNSYQLCEKVFASDXESQLVYSQSIIQRSTIRRNESIKTLNVNLEFIAITCRTTESNEYLXXNSATISISSQSSQXFLSTSIKIFTLEXVSIQIQLTMKSLVND |
| Ga0272438_10021602 | F061400 | N/A | MTSKSIEQIMLLKYYNCIMNLNSEKTIIEVXNIYCRKEDEDNIIDEAADSFKANLQNVLCFIIV |
| Ga0272438_100216022 | F001951 | N/A | MIKILSXMMIIIKLKFINSSRNKREKDEDTVKTTVTKMMIFKLKKLLVDAKMFLTLMNKMMMKTKQD |
| Ga0272438_100216023 | F089602 | N/A | MKNEXLSFIKVLSEESDDLSEIIDIVLQTVNQQEIFYQKTFFLLIKKIVIVNKVIHVLLQSFMKI |
| Ga0272438_100216024 | F008735 | N/A | VNLLIYDESXLDINDFSSMKEVMIIIHVHALYQTLLSCIQSIFVSFILKYVEKLLEFKSDDDSNRICREMNDEKRLIVQDLCNNLNYHCKKLRIQFYINXKIENDEXKXDDNIMLLNLILKLLHCTKNFNXIFNHTLSKLFNSMLIID |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |