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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1002187 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26941 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (22.86%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F005901 | Metagenome | 386 | Y |
| F013598 | Metagenome | 269 | Y |
| F036994 | Metagenome | 168 | Y |
| F044227 | Metagenome | 154 | Y |
| F048685 | Metagenome | 147 | Y |
| F057011 | Metagenome | 136 | Y |
| F070712 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_10021871 | F036994 | N/A | MIIEADSLVDLLIEEINYRLVIEADSLVAREREID |
| Ga0272438_100218710 | F000597 | N/A | MSMSNDSFASESLTTECILSSNEINYSLKSLINIKAADYLFIDEVIVQIVYDQLQIKSLTLIKAKSIREFNDHYAKNLIIYIIYSNLTVQDHIIDITSMLITQLN |
| Ga0272438_100218711 | F005901 | N/A | MIFKLEDDVAKYIFTXRCFDSLNSFTLIYKLFNNLKEIYDELNKNXKFQRKYNILKQADKSFNVFYFNFIKLFNYLDYDNXILMNNLQNKINNRLQNILSICSKNFTSLFRLKKFLQDVNNKQRVNYQLHSKRCTVIIKVTVISDKCITLLLMIISIINYVKSTIFSISESVKSSIICYICKISNHLFKNCSQLNKINIFAS |
| Ga0272438_100218712 | F044227 | N/A | MXLQLRSSDNETGTHVLLELIASAIKNAMKRQLLELSNNHHYYEKSQSSCKNDDENEASETI |
| Ga0272438_10021873 | F013598 | N/A | MNFIINLSDSYNYNAILTVICRLSKERHYILCIIDDENITVKKTAEMLLQXVY |
| Ga0272438_100218731 | F057011 | GAG | LCSQIKVLLKENYFEKSFLINASLISQNNSFSLCFLIDSDFVVYMLIYDKLVNKVCQKLEIQFISLVKEKLIXDYDEKLTRKTITHKILLNLMIESHKKLTMSMLIADIKHHEAILSKFXMNKNEILLNMRHDTIVFSDQLNILILIFSILLNTKHSSXSXSTSIFSAAHNKISKMLKHSVSII |
| Ga0272438_100218732 | F070712 | GAG | MSDIKEKKFLNKVRKQVIFAEKRDSLNLYRKIEITTFVDHSKSYDAILTSVKNINLQAEICFICHKSDHTSRKCSDQSRVNVLKDDEFNHLNSESDSDSKN |
| Ga0272438_10021875 | F048685 | N/A | MYQLSKQNIKINALIHXINVMLKDLDDERIYYQXIIILTLNXMKIADLKKNISESIYKQILEINKIDENCMLLREVIARDET |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |