NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002191

Scaffold Ga0272438_1002191


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002191 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26877
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (20.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F011463Metagenome290Y
F025887Metagenome199Y
F065268Metagenome127Y
F096307Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100219114F011463N/AMKELSIFDCQQLKKIKQIIKAQINKHKQDVIYEVNNXVXLFFRNIKTTRSCKDLKDKQLELYQITIKVEIFYHLHLLISMKHLHSMFSLKLLQSYSEDFLSEQHSESLKSIIIKDNEYXKINNILNFRHYRDRIQYKVKXTNLDRNNEXYYVNKEKFNDSEKVLNEFHRLYSR
Ga0272438_100219115F096307N/AMLYIVVTQINVSLKEDVLKHKKDVDLKDVYDIKKCVYHRNLLIIRNTKKCVYLEDNRSXLEDAESHLSQIXVRFRSDLD
Ga0272438_100219121F025887N/AMSDDSFDFKSFTVDIILNSLEKIFKFLALINIEVIDMTFIDESLMSKLCERFDIQSISLSKSKLIQLYDEISDXKSITHALYTLIMI
Ga0272438_100219124F065268N/AMIKSIELESELVSTTCYELXNAERESLLLQNXTASKEEDMNALLNIKEKNTNVLLFDHEMIKISISTELNAXINIHEADDFIAFIKYIC
Ga0272438_100219129F025887N/AMTESDILIFCFINMFDDSFNFKSFTVDIILNSLKKIFRSFALIDIEVIDIIFIDKSLMSELCECFDI
Ga0272438_100219133F002432N/AMSFDSDMTDYKTTHERLEARKADDIVIXMKKLLSFDRQQLKKTKLIIKVQINKYKXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLNFYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLXLYSKDSLSEQHSESLRSVTIKDDEYXKIDDILNFRCYRDQIQYKVKXKDLDRNNEXYYVDKEKFNDSEKVLNEFHKLYSSKPR
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