NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272438_1002281

Scaffold Ga0272438_1002281


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002281 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26236
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F048017Metagenome148Y
F050043Metagenome145Y
F051591Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100228110F048017N/AMFINHQTLKIFMKNKQLSQXQVNYLNILSKFNFQIIFRSGKMNTKVDALIRMLLANVSESAQRLEDHFQTILTLDRINVLFIESKANLYQXVXMINQTDELCNKYRQAMNENKLKFHITKLKNCEIIDNVLFRKDLLXVSENMHTKLLQEVHDQSSISHLDNKRIIDLVQRFYYXSDH
Ga0272438_100228111F008668N/AMSFDSDTTNDETTYEQLEARKADDIVIQIKELLNFNHQQLKKTKLIIEVQINKHKRDIIYEVDD
Ga0272438_100228117F051591N/AMLDAIALYFVYRSSRVISLRIVTTDLDLLSCASRKGKTDSDLIRNAVLLXNNVVFCAIFEHKRVRFRFLRQYAVFCAVLKSIDDLFFSCEFALRFINQITVXIDDSFFCVDELSFRRRFWPAXARKISIFDFXLATQSPVKLLSRMRACFDRTIVLYNLPIDLIYHMLR
Ga0272438_10022814F050043N/AMKRRXRLRKTERVINKAMIIIHSCLHSIISTTQSNXKTSNVYASFTYDXCCHLRQLHITYNVIYTHYNRRXIIIQLKVSLFLVFSRRFEGFYRELLERNHEYASSFIKINQSINYXDQEXTHLEKKTIVIMNXHIEVKSETKVKDXVKDQIXVNSETL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.