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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1002291 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26140 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (17.24%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F009580 | Metagenome | 315 | Y |
| F020121 | Metagenome | 225 | Y |
| F021026 | Metagenome | 220 | Y |
| F048018 | Metagenome | 148 | Y |
| F048685 | Metagenome | 147 | Y |
| F070710 | Metagenome | 122 | Y |
| F080690 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100229111 | F001951 | N/A | MMIMTKLKFIDSLRNERERDEDTVETTVIKMIIFELKELLINAETFLTLMNEIMMKMK |
| Ga0272438_100229113 | F080690 | N/A | MKLSHNFLIDDERAVEQFAQSMIENSVKIFRIMQELQNQVQQHDVIISFSFIIFSSSIYIKLNFQFLATITQIITQILNNQSSFIVHLFANFVAVFIAFRFKKLLDIFEYEKNKDRLNAXEQSLIQRMNMNDDHYFSHRVKIIYVESXFIISKKTHNLMNQYQVNDLCIIFIFADXXHKLHHYYNNSFKTENVHLYFCETLKQNMNSFVDYYNLFYQKKEHSLMKDFSLIDCLKCNVNYF |
| Ga0272438_100229115 | F001951 | N/A | MIMTKLKFIDSLRNERERDEDTVETTVIKMIIFELKELLVNAKMLLTLMNEMMMKIK |
| Ga0272438_100229116 | F009580 | GAG | MICIQIFERNLAQKLNFSHEQQDFFIYINDIIVVNIHNMQSEKLFIXAFFNDFAQMLQFAVVAKLSLVEDFLDFRNDQSLILNNDNDKA |
| Ga0272438_100229117 | F021026 | N/A | MIVFCILRQAHFKVLVLILIDSEVFAYVFLNKFFAQQHHLFLHQLTHFHRLQEFDDQVALIDDITHVVEITMILDEHIKRLFFYVIKLSQYLIIMSLSXLHHHIIDINFEHNILILSFFFCLNYCYSSFVKIYDLNQQEENFLFKVNKVAFFQSHSQFTHKKQLSS |
| Ga0272438_100229121 | F048685 | N/A | MFIDHQALISLMKDKELSRRQMRXVQKLIDFNFRIMYXSDKQNIKINALTRXADVVLRDSEDERVRYQXITILTLNRMKIADLEKNISESIYKQILETNEIDENCTLLREVIARDETQYEDIKLKNCXTQNKILYHDSQL |
| Ga0272438_100229128 | F070710 | N/A | MTKQLFLQILQYNIRKSLKIQESFLINREVRRFDIVIIQKQERNINDLQSFSSAHNFFYLVKNSFFQSRTCIYVNKCLRLDQXTVETVESNICSIRILTCNTDDEMQMLRLLNIYNLSSLFSTFTERLSTIFRLNELLKNDCKQLVVEDFNLHHSHXEKXRCFTRHMMIDTLLNVITNARLKLLLKSDTITCKTHNQFTTINLVFSSEKI |
| Ga0272438_10022914 | F020121 | GAG | MLIAQIIYKFNVNLFHRSCFKYFIEDEVXLNACNLSIAHLVIKLDDCNVDLFKIKHVFKNNSLIIELNLSTFMKIHSIFHVILLNHIASDFLSSQRQKFQELIVIKNDKRFXYVNSILNFKHDRYYNSLLLKYYINXKDHFFTXKSFHLLNNCEQMLDEYHLVNSVIEESHVLSCVISQYQCQEL |
| Ga0272438_10022915 | F048018 | GAG | MIQRRSLSELSTYFLSXKYRXFSCSSHSIKEILLXCCASLXSTSIIXAANLLLISICFHNVXVRMSAESXSRFRMSXSSXNLMFSTLNSSISRFMRARICKDAEIIKNKCNXTEFRTMICDXSFMTLMLKTSRTRFSTILRFKTXIFRIVXCXYXCXELNVFLSLERSSERRVRAFNLSLILSRX |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |