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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1002407 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25302 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010214 | Metagenome | 306 | Y |
| F024448 | Metagenome | 205 | Y |
| F028368 | Metagenome | 191 | Y |
| F074203 | Metagenome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100240714 | F024448 | N/A | MSMSDNSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFNDHYAKKLITHVIYLNLTVQDHTIDTASMLITXLNQHQMILEKTXMNKIDLVIDMQIDFLRFSNFNPTSQKSIVLFSSHKTITKQKSLTSTHILRRLFTFVTF |
| Ga0272438_10024072 | F010214 | GAG | MRVSVLFDYDASSLPCSSLTIFYTTMFRSDPRSEDERRFLRIRDARDCNVRRAVFSYSMIAIHXAEKYVMKERRTRXEDRVXLYXVTLSFSXLGLCHVDVEXIVSIGVRSQSFDVWLXSMKEDAFXSFSXALDFSRR |
| Ga0272438_10024075 | F028368 | GAG | LCKLDEILSEENYFEKSFLIDTHLISQNQSFSLCFLINSDSVIYMIIHSNLVNKVCKKLKIQSISLTKEKLIKDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIVDIDHHEVILNKLXMNKNEILLNMRNDIIVFSNQLNTSISIFSILLNSKHSSXLRSTLFSSITQTKISMMLKRLISITVQKKSFSIQSINTASFKILLNHSKKNKIKVFALFMMNINRKITYNTQCDLNALNISSINEMT |
| Ga0272438_10024076 | F074203 | N/A | MLSHLLTEECFEEFRNRFSQISDADSLKSQTKSSSATSFIHEDDESFIETIIFLMFYEIXKAXSLALDEETDRLYKLDKQQEDEIKELKTKLQAKENTSSDFIYSERSRSQKISNSSLFTDEKNSTXKNXYEKFQNKLEINVDLFSNKXVKLSYVHFRLFNDAAEIIQSRREHDYVNLYKIIDDLLKELAELFNDSNKKVNFRKEYYNLIQESKKFSKFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLQFIXINQLVQSDSLKEIHFYLIHLNNNQRVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |