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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1002438 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25071 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (4.17%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F008735 | Metagenome | 328 | Y |
| F021026 | Metagenome | 220 | Y |
| F023763 | Metagenome | 208 | Y |
| F087979 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100243810 | F021026 | N/A | MIVFCILHQAQSKVFILILIDSEIFAYVFMNKFFMQQHHLLLYQLTHSCRLQEFDDQVTLIDDIIHVVKITMILNEHIEKLFFYIIELSQYFIIMSLSXFHHHVIDVNFEHNILILSFFFCFNHYCSSLIKIYDLNQQEENFSFKVNKVAFFQSHSQFTHKK |
| Ga0272438_100243812 | F008735 | N/A | VNLLIYDESXLNIDDFDSMKKIMIIIHVHALYQTLLSCIQSIFVFLIFKYVEKLLEFRSNKNNDRVHKEVNDKKRLIIQDLCNDLSYHHKRLRIQLYINXRTENNEXEXDDDIMLSNLILKLLHYMKDFNXIFNHTLSELFDNMLIIDQEIVKXLYLSERIIKXDFNV |
| Ga0272438_100243813 | F087979 | N/A | MKEKNENSTFIYMNXTESRLNNSFIDLKLQKFAHMIEMIETKLLKLN |
| Ga0272438_100243818 | F000597 | N/A | MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIEFLTLNKAKSIREFNDHYAKKLITHVIYSNLTVQDHMINTA |
| Ga0272438_100243819 | F003820 | N/A | MNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKRXVNYQLRNERYTVIIKVTVVSDKCATSLSITTLIINYVKSTIFSISESVRLSIICYICNIFDYLFKNCSQLNKINTSASCAFTSCLHEIIISKNKENEKMSFENNKTKN |
| Ga0272438_10024389 | F023763 | GAG | MNFQNCLMLILISRIECISLFKKIFXAMCHSIQLIINLVEMISNVIVESRQKLTSTSLMITQLLNXHEILKIFMICDHLNRINKVFKLXSSFFESINNDHEFFIVDLVVTLDXVMLLXKVSDXMKNLIFIILKKNVFEYIVXSIDFYHNLVIXIIVTKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMSKRNSYSTIVIDKSFIKVREI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |