NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002463

Scaffold Ga0272438_1002463


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002463 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24903
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F025887Metagenome199Y
F048017Metagenome148Y
F083460Metagenome112Y
F087978Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100246311F083460GAGMRMRMKSLNSQAYSDALLELNASSIEYATRRRLHELSNHCLNHEEFQGNSENDDENEAAEAV
Ga0272438_100246314F008169N/AMFSHSFIEECFKEFQNRFSQISDADSSKSRTKSSSAASFIHEDDKSFIETIIFLVFYKIXKTXSLVLDKETDQLYELNKXQENEIKELKAKLQAKEITSSDFIYSERSRSQKISDSSLFTDEKNSIXNIXYNKIQNKLEINVDLFLNERVKVSYIHSRLFNNAAEITQARREHDCINLYKTIDDLLKELAQLFNDSNKKINFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKINSCLQFIXVDQLVQSDFLKEIHFYLIHLNNDQRVIQEIKNKLKCINDLSKTIFHKVTVIT
Ga0272438_100246317F048017N/AMKNKQLSQQQVNYLNILLKFNFQIIFKSGKMNTKVDALIRMFLVNISESAQRLEDHFQTILIFNKVNVLFIKSKANLYQXVXMINKTDELCSEYRQAMNENRLKFHITKLKNCKIIDDVLFRKDLLXISENMHTKLLQKVHDQSSISHLNNKXIIDLVQRFYYXSDHQATIRXYI
Ga0272438_100246319F087978N/AMKYLHLMFSLKLLQSYSEDSLSKQHSESLRLITIKDDEHXKIDDILNFRCYXDQIQYKVKXTDLDRNDKXYYVDKEKFNDLKKVLNEFHKLYSNKSR
Ga0272438_10024634F025887N/AMSDDSFDFKSFTVDIILNSLEKIFRFLTLINTKVIDMTFINESLMSELCERFDIQLILLSKSKLI
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