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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1002637 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23861 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (32.14%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F004755 | Metagenome | 424 | Y |
| F008735 | Metagenome | 328 | Y |
| F010214 | Metagenome | 306 | Y |
| F038009 | Metagenome | 166 | Y |
| F080688 | Metagenome | 114 | Y |
| F089602 | Metagenome | 108 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_100263711 | F038009 | N/A | LIELICLKNNRSFRKKRILTLDFXXIFFLNDLKNTTRSFLFQMRDKIEXNLFLVNELSISXLLVSKREFILLLVSRXKTELLFASELRTELLLVSELKTELLLSSKXKIKLLLASKLSAKLLLSSKXKTKLLLASKLNAELLLVNDL |
| Ga0272438_100263715 | F010214 | GAG | VSVLFIYDASSLLCSSLTIFYTTMFRFDSRFEDKRRFLCTRDACDCNVRRAAFSCSMIVIHCAEKHVMKERCTRXKDRVXLYXVTLFFSXFDLCHVNVEXTVSIDVRSQSFDVXLXSMKENAFXSFSXALNFSRR |
| Ga0272438_100263722 | F096307 | GAG | MLYIVVTQIDASLKEDVLKHKKDVDLKDVCDIKKYVCHRNLLIIHNTKKCVCLEDNRSXLEDAEKEKRCXVISXLALIIMQRTR |
| Ga0272438_100263725 | F080688 | N/A | MLXTLMTXIEMHXITHSDVHQSSDFEDFYEKQTVESMTSQLSEHSIEVQISNHL |
| Ga0272438_100263727 | F004755 | GAG | LNYVHSRLFNNAAKIIQAKCKHDYVNFYKIVNDLLKELAQLFNDLNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHKKQLIADLKDKIHSCLXFIXVNQLVQSDSLKEIHFYLIHLNNDQRIIXKIKDKIKRVDDLSKTIFHKATVVTQSVNYSKSDHLKLHEVILTSVKEADILVESFFVCHKSDHSSKECFNRLTRINAMNNEYDRFNFNSNFDSKN |
| Ga0272438_10026376 | F008735 | N/A | VNLLIYDESXLDINDLSLMKEIMIIVYVHALYQTLLSCIQSIFVSFIFKYVKKLLEFRSNDDSDRVHREMNDEERLIVQDLCNDLSYYCKRLRIQFYINXRTENNKXEXDNNIMLLNLILKLAHCAKDLNXIFDYTLSKLFNSLLIVDQEAMRLLHLSEKITRRDFNVXKRCRKCRSFIMSKTRLN |
| Ga0272438_10026377 | F089602 | N/A | LSFIEISSEENDDLSEIIDITLQTVNQQEIFDQRTFFLLIEEIVIFSKAIHVLL |
| Ga0272438_10026378 | F001951 | GAG | MMIIIKLKFINSSRNKKERDEDTVETTVTKMIIFELKEILVNAKMLLTLTNEMMTKMKQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |