NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002704

Scaffold Ga0272438_1002704


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002704 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23537
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F070710Metagenome122Y
F075493Metagenome118Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100270411F094622N/AMFASKQKVYLNDSDSKNDVTMIVMRMNXELNKRLKELTLVITHHDELKELVARMKHLANVTIVNQEYHEKIYKVYNDSQTFLKTVKAMILTKD
Ga0272438_100270415F070710N/AMIKQSFLRILQYNIRKSLRIQESFLIDRKVQKFDIVAIQKQDCNNNDLQSFSITHNFFHLVKNSSSQSRTCIYVNKHLKLNQXIVETAESDICSIRILTCNTDDKTQMLRLLNVYNSCSLFTTFTKKSSIISRLNELLKNDCEQLIIEDFNLHHSHXERXRCFTRHTTTDILLNVITNARLKLLLKSDTITHEAHN
Ga0272438_100270418F075493N/AMQSVQAVHEYMLRRLMTSFAVASQAIRAXNISRVQISIQIYAFNSDVHCKNAFCFLKIVTHLYHLIAQMQSLCXDCINVCDAFSVLFSSLISLILMILRYCDAIACXNHCEEENVSSASQLYLRIFLNEDIQKYYFLDDEXARNNAINSRQMNAY
Ga0272438_10027042F010214N/AVSVLFIYDASSLLCSSLTIFYTTMFRFDSXFKDERHFLCICDAHDYNVHRAAFFCSMIVIHCAEKYVMKERCTRXEDRVXLYXVILFFFXFDLCHVDVEXIVSINMQSQSFNVXLXSMKENVFXSFSXALNFSRR
Ga0272438_100270426F094622N/AMFILKQRVYLNDSDSKDDVTAIMMKMNXKLNKRLRKLTLVITDHNELKKLVVKMKHLANVVTANQECHEKIYKVYNDNQTSLKTVKVMISTKN
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