NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002724

Scaffold Ga0272438_1002724


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002724 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23419
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (18.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F044227Metagenome154Y
F083460Metagenome112Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100272413F100079N/AMFRYKHSIHEQYADEKTLLKEKKHKQVNKEXSNYAVXLKV
Ga0272438_100272418F044227N/AMXLXLRSSDDETCINALLELIASAIKNVMKHQLLELLNNHCYHEESXSSCKNDDENEASEAI
Ga0272438_100272421F083460N/AMQLXMKSSNSQAYSDALLELNASSNKYITRYQLHKLLNHHLNHEESQDNSENDDENEAAEAV
Ga0272438_10027247F010214GAGMRVSVLFDYDASSLLCSSLTIFYTTMSRFDSRFEDERRFLCIRDARDCNVRRAVFSYSMIVIYXAEKYVMKERYTRXEDRVXLYXVTLFFSXFDLCHVDVEXTVSINMQSQSFDVXLXSMKENAFXSFSXALDFSCE
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