NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002786

Scaffold Ga0272438_1002786


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002786 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23071
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (11.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F004755Metagenome424Y
F017767Metagenome238Y
F018839Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100278611F004755N/ALKELAELFNDSDKKVNFHKKYYNLIQELKKFSEFYTQFQQLSFYLKYHKKQLIIDMKDKINFHLXFIXIDQLVQSDSFKKIHFYLIHLNNNQRVIQEIKNKVNLIKDVDDLLKIIFHKAVVTQSVNHSKSDHLRSCNAILTNVKKVNVLVETCFICHKSDHSFKECFDQSIRINAVNNEYNHFKFNFNSNFDLKN
Ga0272438_100278616F017767N/AMKNVLISSTISMSDDSFTSESLTTEYILSNNEISYSLKSLIDIEAADYSFINEVIV
Ga0272438_10027865F018839N/AMMIAKVVTFDHLTSDLYAAIFIIAMFIESKDEVKLIELNDFTILLNEDDFSLS
Ga0272438_10027867F001253N/AMMKDVLISSTMSSSKDFFTSKSLTIECVLFSNEISYSLKSLIDIEATDYSFIDKLIAQNVYDYLQIESLSLIKLKSIKEFNDHYAKKLITHAIYSNLTV
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