NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002867

Scaffold Ga0272438_1002867


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002867 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22613
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F046102Metagenome151Y
F048018Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100286712F048018GAGMIRRRSLSELSMYFLSQKYRXFSCSSHSTKEILLXYHASLQSASIIXAANLSLISTCFHNVXVKMLAESSSRFRVSXFNXDSTFSTLNSSISKFMKAKICKNAKIIENRCNXTEFKVMICDXSFMTLMSKMLKVRFSTISRFKIXILRIVXC
Ga0272438_100286717F046102GAGGVTFIKGAMKDVLISSTTSSSDDFFASKPLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIEPLSLTKLKPIKGFDDHYAKKFITHAIYSNLTVQDHMKRFVFMLITRLDQHQMILEKTXMNKIEMTIDMRDDRLQFSSFEAHIKDSIKAHSTVLSSKKIAIEQK
Ga0272438_10028679F008735N/AVSLLIYDESXLKINDLDLMKEVMIIIHVHALYQTLLSCIQSIFVLLIFKYVKKLLESRSNEDNDRVCRKMNNERRLIVQDLCDNLSYYHKRLRIQFYINXRTENDEXKQDDNIMLLNLILKLLHCMKDLDXIFDHTLSELFNSILIIDQEIVKRLHLSERITRRDFNIXKCCRKCKSFVMSKTELN
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