NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002884

Scaffold Ga0272438_1002884


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002884 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22517
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F058565Metagenome134Y
F066295Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100288413F021896N/AMMKNNIKSEHFLKSVECFLTFLKSDKEFNLSDEMSEXSSYSVIVIDKSSIKVREI
Ga0272438_100288421F001951N/AMMIMTKLRFIDSLKNEKEKNENIVKITVTKMIILEFKELLVDAKTFLTLMSKIKKKMMKXNX
Ga0272438_100288422F055319N/AMKRLMLVNKMICIQIFECNLAQKLNFSXIQXNFFIYTNDVAVVNVYDMQSKELLI
Ga0272438_100288424F066295AGGMTLDRETDQLNELSKQRDDKIKELKARLQTKEITSSDFIYSERSRSQKISDSLXFTDEKNSTXKNWYGKIQNKLEINVDLFSNERVKLSYVHFRLFDDAADVAQSRREHDCVNLYKIVDNLLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQF
Ga0272438_10028845F058565N/AMNRSNADSKTIASDVDSLQENRDARLKHSCNDEENVANIIDLLIKTSTLEKEKSKDHS
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Institute for Fundamental Biomedical Research
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