NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002946

Scaffold Ga0272438_1002946


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002946 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22227
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F010214Metagenome306Y
F037509Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100294614F010214GAGVSVLFIYDASSLLCSSLTIFYTTMFRFDSQFKDKRRFLCIHDARDCNVCKAAFSCSMIVIHCAEKYVMKERCTRXEDRVXLYXVTLSFSXFDLCHVDVEXIVSINVRSQSFDVXLXSMKENAFXLFSXALDFSRR
Ga0272438_100294615F037509N/AMILISILIQIHSTDNETSIKKFVYLMIDNIERQNNIKKSIESMKTYNHMIARESIAQLIASVQIN
Ga0272438_100294618F006206AGAAGLCNQVEVLLKENYFEKLFLINASFISQSNSFSLRSLIDSNFIIYTLIHDKLVDKVCKKLEIQFILLAKEKLIREYDEKLFKKAITHKILLNLTIESHRELTMSMLIADIEHHEAILDKLXMNKNEILLNMKHDTIVFSD
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