NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1002949

Scaffold Ga0272438_1002949


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1002949 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22214
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009446Metagenome317Y
F029944Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100294917F009446AGGGGGVSDLSEDLARAYEARVAAADVELTPAAIRAVVQALGGGEGRAQVAAGNKELAGQLGISVRTVQRWQKEGGEARSVARSTPGLRISVRGIATEQQRQANARAFRERVQEQGLDVGACRVMVLVYNEERARPRSIGDMHIAGTNEGLIDALDALEDGNTAAAAEAFGNAWLGTYGIDVDAEVTDVVGTFALT
Ga0272438_10029499F029944GGAGGMNTATAGRGGPAAGALAYTVDGQGRVLSVREATPPDPAIARADAVPPVALWTLVAPLTWEPVQRLLAWGAREGMTAAELLDTCRATTHPTTRRRRSAR
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