NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1003035

Scaffold Ga0272438_1003035


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1003035 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21793
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036994Metagenome168Y
F044226Metagenome154Y
F086377Metagenome110Y
F087978Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100303518F087978N/AMFSLKLLQSYSEDFLSEQHAEFLRFIIIDDDDNEYXKIDDILNFRRYXDXIQYKIKXKNLDRNDEXYYVDKDEFDDFKKVLNEFHMLYSRKSR
Ga0272438_100303519F044226N/AMKFSNNFNIFLIISMISFYFNKDFHSXMSFNSDTTDYEITCERLKARKADDIVIQMKELLSFDH
Ga0272438_100303520F036994AGCAGMXNKVIIEADSLVNLLIEKIDYQLVIEADSLVACEREVDRFTDR
Ga0272438_10030353F086377N/AMIQRFXDQRQRISILDCDSVQISIVHAEVKLFFEFLDEKNRDDCLKATDLNEIFAQILI
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