NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1003079

Scaffold Ga0272438_1003079


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1003079 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21561
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024448Metagenome205Y
F036035Metagenome170Y
F071806Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100307910F071806N/AMKLQSQIITLDSVQLHLSSIISALLQILVFMNLKLEEFNVEDVKSQLNQDILNLDEDFADTFT
Ga0272438_100307921F036035N/AMKDDAMQKEHHELEKVSRNHECDNSNHSNNILNKHTESISDCDVIEESNERKRK
Ga0272438_10030793F024448N/AVTFIKDVMKDVLISSTMSMSDDSFASESLTIECVLSSNEISYLLKSLIDIEAADYSFINEVIAQIVCDQLQIKSLTLIKAKSIREFDDHYAKKLITHVIYLNLTIQDHTVDIAFMLITQLEQHQMILEKTXMNKTDLVIDMQINSLQFSNFNSRSTVFFLSKRITLKQKSLTFTYILKRSFTSVTS
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