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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031448 Open in IMG/M |
| Scaffold ID | Ga0272438_1003244 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20878 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (38.10%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.58 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F002432 | Metagenome | 559 | Y |
| F023763 | Metagenome | 208 | Y |
| F038009 | Metagenome | 166 | Y |
| F048018 | Metagenome | 148 | Y |
| F052973 | Metagenome | 141 | Y |
| F080690 | Metagenome | 114 | Y |
| F094625 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272438_10032441 | F002432 | N/A | RMSFDSDTTDYETTRERLEVRKADDIVIRMKELLNFDRQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSSRNVKTTRLCKDLKDKQLDLYQITVKVSIFYHLRLSVSMKHLHSMFSSKLLRPYSEDSLSEQHSESLRSINIKDDEHXEIDDILNFRRYRGRIQYKVKXTDLDRNDEXYYVDKEKFDDSEKVLNEFHKLYSNKPR |
| Ga0272438_100324410 | F048018 | GAG | MIRRRSLFKLSTYFLSXKYRXFLCSLHSTKEILLXYHALLQSASIIXTANLSLILIYFHNVXVRMSAKFSSRFRVSXSSXDLMFSTSNSSISRFMKTRICKNVEITENRCNXTEFKVMICDXSFMTLMLKTSKVRFSTISRFKTXIFRIVXCXYXCQELNVFLFLKRSSEQHVKAFNLSLILSRX |
| Ga0272438_100324412 | F038009 | GAG | MIKALSFQLDYIKLYKRSIELICLKDNRSFKKKRILTLNFXXVFFLNDLKNMIKSFLFQMRDKTERDLFLVNELSINXLFMSKXKIILLLVSRXETKLLFMSELKTELLLVSELKTELLLSNEXETRLLFASELKTELLLLSE |
| Ga0272438_100324414 | F023763 | GAG | MSFQNCLMLILMSRIEYIFLFKEIFXAMCQSIQLIIDLVKMISDAIVECKQKFALTSLMMIQLLSXHEILKIFVIRDHFDRIKRVFKLXSSFFKSMNNDHEFFIINLVVTLNXVMLLQKVSNXMKNLIFIILKENVFEHIVQSIDFYHNLVIXIIVTKNNLESEDFFKNVECNLTFLKSDKEYIFSDEMSERSSYSTIVINEFSIEVREI |
| Ga0272438_100324418 | F094625 | N/A | MKSSYNLLIDDERAVEQFAQSMIENSVEIFHAMRKLQNQVRQHDVIISFSFIVLNSLIYIELNFQSFAMIAQIIAQILNNQSSFVVYFFANFVAVFITSKFEKLLDISKYEKNKDQLNAXEQSLIQRMNVNNDHYFFHRVKIIYVESRLIIDKKIHNLMSQYQVNDFCIIFIFTDX |
| Ga0272438_10032442 | F052973 | N/A | MFRDCARPERDVFVTREEYDVDEQDVGERKECWERKRVLSHI |
| Ga0272438_10032446 | F080690 | N/A | MKSSHNLLIDDEHAVKQFTQSMIENSVKIFRVMQKLQNQVQQHDIIISSSFIILNSSVYIELNSQSFVMIVQIIIQILNNQSLLIIHFSANFVAVFIASRFKKLLDISEYEKNKDXLNAXKQSLIQRMNMNDDHYFFHRVKIIYVESXLIIDKKTHNLMNQYXINNLCIIFIFANXXHKLHHCCNNSFETENAHLYLRETLKQDMNSFVDYYNFFYQKKECSLMKDFSLIDCLKRNINYFTQVIIFF |
| Ga0272438_10032447 | F001951 | N/A | MTMTKLKFIDSSRNKKEKNEDTVETTVTEMMIFELKKLLINAKTSLTLMNKMMTKMK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |