NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272438_1003258

Scaffold Ga0272438_1003258


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1003258 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20806
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F004755Metagenome424Y
F059496Metagenome133Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100325821F059496N/ALIFRNNYNXILRIQKKIDTKASIYVMFKDCARLERNVFVTXEECDVDEQDVDERKKGXKRKRMLSYI
Ga0272438_100325822F081945N/AMFNYSFTEKCFEEFQNHFSQISDADSLKLRTKLSSAASFIHEDNELFAEMIILFMFYEI
Ga0272438_100325823F004755AGAAGLKDKIHSHLXFIXVNQLVQSDSLKEIRFYLIHLNNDQRVIQEIKNKIKCVNDFSKTIFHKVTVIIQSVNHLKFDQLKSRDAILISVKEADMLVESCFICYKSNHSFKECLDQFTRINAVNKKYDRFDFDSNFNSKN
Ga0272438_10032585F001253N/AVTFIKDLMKDVLISSTMSSSDDFFALKSLTIECVLSSNEINYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLIIHAIYLNLTVQDHMKRFVFMLITQL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.