NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1003319

Scaffold Ga0272438_1003319


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1003319 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20559
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F040408Metagenome161Y
F075493Metagenome118Y
F094622Metagenome105Y
F100079Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100331910F040408N/AMYDYESIFDIYIKNDAIKEKVSTTKKYVEMLQDMXNILTQX
Ga0272438_100331916F075493N/AMQSVQAMHEYMLRHLMTSFIVASXTIHVXNVSRVQISVQIYAFDSDMHCKNAFCFLKIITHLYYYLIAQMQSLCXDCIDICNAFSVLFSSLISLIFVILRYCNVIACXNHCEEENTSSASXLYLCIFLNEDIQKYYFLDDE
Ga0272438_10033195F021216N/AMKSRIKSNATRREHHELEKALKNHERSNDDHSNNILNEHTESILSCDIIKKLNEREKK
Ga0272438_10033197F094622N/AMSISQHHLDTFALKQRVYLNDSNSRKNVTMIAMRINXELNKRLRKSTLIITHHEKLKELIVRVKHLADVVTKNQKCYENIYKVYSDSQTSLKTVKAMISTKDQTCLQ
Ga0272438_10033199F100079N/AMFKYKHFIQEXYADEKTLLKEKKYKRINKEXLNYAVXLKV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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