NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1003375

Scaffold Ga0272438_1003375


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1003375 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20355
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (89.66%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F042663Metagenome157Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100337511F008598GGCGGMVHLHADDTTDDALLAHVTLTTDYVTADDVGPLVAALHAVGVTVERHTFLPVRGEEQHPWGVLLLAASGPPQPLARLVVPATAPAGVAPALAAALEIGQRPAPATLQLKAAGVFVSIRGQDILDITQALDGLPAQFARLDTRREERRLVYSEGAWRIDP
Ga0272438_100337520F074201GGAGGMDHIDITPTPEACRQIARLFLAQRADAEALAARAARAVDDLDATDDDALAPWGRRLLASAFAALHDAEQARVRHMDEGVEALGLYADADDREGSDDAP
Ga0272438_100337524F042663AGGAMTSQIIPALHLAASIPSIPPRPAIALYDGDVSVTTTFRPLDPLSATEVVASLDLPDATGLLNLLDATITRLIAYRDAYQQAMTANDQPVMDDDADPAPPRAPLPLPVPWYAW
Ga0272438_100337528F058564AGGAGGMTPIGYTLHGHPLCLSCLAGDDALILAGVAATHDGQSHAADVAPIHPGDLGDLDDGASCAGCGLPLVAPLEPGIVWTCPACGSADLHAFYSERRACRVGARDDTGDPADAEPWPSYADDEFVDIDPATFAFACDACDTHGITPHKGGRTHALGHQQAA
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