NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1003490

Scaffold Ga0272438_1003490


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1003490 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19927
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y
F020121Metagenome225Y
F074204Metagenome119Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100349013F008735N/AMREIMIIIHLHALYQTLLSCIQSIFVLLIFKYVKKLLEFRSDDDSDRVRRKMNDEKRLIVQDLCNYLSYHYKKLRIQFYINXRTENNEXRXSDNIMLSNLILKLLHCMKDLDXIFNHTLSELYNSTLIVDQEIVKXLHLNERITRXDFNIXKRCRKCRSFIMSETELN
Ga0272438_100349016F009580N/AMIEVKVKRLKLVNKMICIQISEHDLAQRLNFSCEQXDFFIYIDDITVIDIHDTQSEELFIXAFFNSFAXMLQLAVVAQLSLVADFLDFRNDQNLILNNDNDEV
Ga0272438_100349017F074204N/AMIVFCILHQAQSKVLVLALIDNEVFVYVFMNKFFAQQHHLFLHQLTHSRRLQEFDDQVTLINDIIHVIEITLKDYSSMSLN
Ga0272438_100349020F086377N/AMIQRFXDQKQRILILDYDNVQISIVHAEAKFFFKFLDEENRNDCLRMTDLNEIFAQIFIQITTKF
Ga0272438_100349023F020121GAGMKKLTEHLRDEMFIAQIIYEFNVNFFRRSCFKYFVEDEVXLNVCNFSIIRLAIKLNDHNVDFFKIKHVFKNNFLIIELNLSAFMKIHSIFHDILLNHIASDLLSNQRQKSQELVIIENDKRFXYVNSILNFKRDRCYNSFLLKYYVNXENHFSTXKSFHLLNNCEQVLNEYHLVNSVVKESHVLLCVMSQCQYQEL
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