Scaffold Ga0272438

Basic Information
Taxon OID	3300031448 Open in IMG/M
Scaffold ID	Ga0272438_1003494 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031448 Open in IMG/M

Scaffold ID

Ga0272438_1003494 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19911
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (27.27%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19911

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (27.27%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.9	Long. (^o)	161.58	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.9

Long. (^o)

161.58

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F009580	Metagenome	315	Y
F028367	Metagenome	191	Y
F052973	Metagenome	141	Y
F080688	Metagenome	114	Y
F087980	Metagenome	109	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100349411	F087980	N/A	LINDERVVKQFTQSVIENSVEIFHVMQELQNQVQQHDVIILSSFIILNSSIYIKLNSQSFAMITQIITQILNNQSFLVVHSSANSVAVFIASRFKKLLDISEYERDKDQLNA
Ga0272438_100349417	F094624	N/A	LINLNQNLCLNFKSFESLLKNLTFQAXDKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNLFCRSCFKYFVENEVXLNVCNFSITHFIVKLNDHNVDLFKIKRVFKNNFLIIELNLSTFMKIHLIFHVILLNHITSDFLSN
Ga0272438_100349419	F028367	N/A	LYLDSIKVIIISVFYINSIFNLAQFLTENYFEKLFLIDVHLIFQNRSFSLCSLINSDSVIYMIIHFNLVNKVCKKLRIQFILLTKEKLIKDYDEKIFKKIITHKILLNLIIESHKKLIVSMLITDIDYHEVILSKLXMNKNEILLNMQNNIIVFLNQLNTSISIFSILLNSKHLSXSRSTSSSSITQTKIFMMLK
Ga0272438_10034942	F052973	N/A	MFRDCARFERDVFVTRKECDVDEQDVGERKGCWGRKRVLDHIWARSGPDLG
Ga0272438_100349421	F080688	N/A	MTQAEMHXIIHSDVHXSSDFKDLHEKQTVESMTSQLSEHFIEVQLSDHLXIRQNEH
Ga0272438_10034946	F009580	GAG	MICIQISKCNLAQKLNFFCKQRDFFIYIDDVIVINVHDMQSEELLIXAFFNDFAXMLQFAVVAQLSLVADFLDFRNDQNLILNDDNDKT
Ga0272438_10034948	F004755	GAG	LFDDSNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKIHLRLXFIXVNQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKIKRVNDFSKTIFHKATVITQSVDHLKSDQLKLHDAILTNVKEADILVESCFICHKSNHSFKECLNXSTRINAVNNEYDCFDFDSNFNSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272438_1003494

Overview

Ecosystem & Geography

Associated Families

Sequences