NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272438_1003679

Scaffold Ga0272438_1003679


Overview

Basic Information
Taxon OID3300031448 Open in IMG/M
Scaffold IDGa0272438_1003679 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19152
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.58Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009580Metagenome315Y
F020121Metagenome225Y
F055318Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272438_100367911F055318N/AMLRDDEALCVDRVQSFRDRADFDNLNVHATSNLHADEKVK
Ga0272438_10036794F009580N/AMICIQIFECNLAQRLDFFXIQXNFFIYADDVAVVDIYDMQSEEFLIXAFFSDFAXMLQLAVVAQLSLVADFLDLRND
Ga0272438_10036799F020121GAGMLIAQIIYEFNVNLSCCSCSKYFVEDEVXLNACNLSIAYFAVKLNDYNVDFFKIKCVFKNNFLIIELNLSAFMKIHSIFHVIFLSHIASDFLLSQRQKFXELIIIKNDERFXYVNSILNFKRDRCYSSSLLKYYIDXKDHFSTXESFHLLNNCEQTLNEYHLVNSAVEESHVLSCVMSQCQCQEL
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